Evidence map›Paper›PMID 27427963›Full record

ArticlePLoS computational biology2016

The Integrated Role of Wnt/β-Catenin, N-Glycosylation, and E-Cadherin-Mediated Adhesion in Network Dynamics.

Diego A Vargas, Meng Sun, Khikmet Sadykov, Maria A Kukuruzinska, Muhammad H Zaman

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Cancer informatics · 2022
    Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
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  13. Article
  14. Inhibition ofJournal of molecular pharmaceutics & organic process research · 2018
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Diego A VargasDepartment of Biomedical Engineering, Boston University, Boston, Massachusetts, United States of America.
Meng SunDepartment of Biomedical Engineering, Boston University, Boston, Massachusetts, United States of America.
Khikmet SadykovDepartment of Molecular and Cell Biology, Boston University School of Dental Medicine, Boston, Massachusetts, United States of America.
Maria A KukuruzinskaDepartment of Molecular and Cell Biology, Boston University School of Dental Medicine, Boston, Massachusetts, United States of America.
Muhammad H ZamanDepartment of Biomedical Engineering, Boston University, Boston, Massachusetts, United States of America.
Boston University · US

Funding

Modeling bi-directional signaling and cytoskeletal dynamics in 3D cell migrationsU01CA177799 · NCI · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI GERTLER, FRANK B, KAMM, ROGER D · 2013 to 2017
$3.0M
Boston University Cross-Disciplinary Training in Nanotechnology for CancerR25CA153955 · NCI · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI FALLER, DOUGLAS V, GOLDBERG, BENNETT B · 2010 to 2014
$2.1M
Head and Neck Cancer Symposium: From Pathways to TherapiesR13DE025552 · NIDCR · BOSTON UNIVERSITY MEDICAL CAMPUS · PI KUKURUZINSKA, MARIA A. · 2015 to 2015
$15k
Howard Hughes Medical InstituteNCI NIH HHS R25 CA153955NCI NIH HHS U01 CA177799NIDCR NIH HHS R13 DE025552
6 · The paper itself

Abstract

The cellular network composed of the evolutionarily conserved metabolic pathways of protein N-glycosylation, Wnt/β-catenin signaling pathway, and E-cadherin-mediated cell-cell adhesion plays pivotal roles in determining the balance between cell proliferation and intercellular adhesion during development and in maintaining homeostasis in differentiated tissues. These pathways share a highly conserved regulatory molecule, β-catenin, which functions as both a structural component of E-cadherin junctions and as a co-transcriptional activator of the Wnt/β-catenin signaling pathway, whose target is the N-glycosylation-regulating gene, DPAGT1. Whereas these pathways have been studied independently, little is known about the dynamics of their interaction. Here we present the first numerical model of this network in MDCK cells. Since the network comprises a large number of molecules with varying cell context and time-dependent levels of expression, it can give rise to a wide range of plausible cellular states that are difficult to track. Using known kinetic parameters for individual reactions in the component pathways, we have developed a theoretical framework and gained new insights into cellular regulation of the network. Specifically, we developed a mathematical model to quantify the fold-change in concentration of any molecule included in the mathematical representation of the network in response to a simulated activation of the Wnt/ β-catenin pathway with Wnt3a under different conditions. We quantified the importance of protein N-glycosylation and synthesis of the DPAGT1 encoded enzyme, GPT, in determining the abundance of cytoplasmic β-catenin. We confirmed the role of axin in β-catenin degradation. Finally, our data suggest that cell-cell adhesion is insensitive to E-cadherin recycling in the cell. We validate the model by inhibiting β-catenin-mediated activation of DPAGT1 expression and predicting changes in cytoplasmic β-catenin concentration and stability of E-cadherin junctions in response to DPAGT1 inhibition. We show the impact of pathway dysregulation through measurements of cell migration in scratch-wound assays. Collectively, our results highlight the importance of numerical analyses of cellular networks dynamics to gain insights into physiological processes and potential design of therapeutic strategies to prevent epithelial cell invasion in cancer.

Indexed as

GlycosylationAnimalsbeta CateninCadherinsCell AdhesionCell LineCell MovementComputational BiologyDogsMadin Darby Canine Kidney CellsModels, BiologicalN-AcetylglucosaminyltransferasesWnt ProteinsWnt Signaling Pathwaybeta CateninCadherinsdolichyl-phosphate alpha-N-acetylglucosaminyltransferaseN-AcetylglucosaminyltransferasesWnt Proteins

Identifiers

PMID27427963
PMCPMC4948889
OpenAlexW2499489623

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.