ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2016
Draft genome sequence of an elite Dura palm and whole-genome patterns of DNA variation in oil palm.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed.
- EgKT2-1, an inwardly rectifying Shaker-type potassium channel in oil palm that correlates with oil yield.Plant cell reports · 2026Article
- Whole-genome sequencing of wild and ancestral Dura provides insight into the untapped genomic information of undomesticated oil palm (Elaeis guineensis Jacq.).DNA research : an international journal for rapid publication of reports on genes and genomes · 2025Article
- Chromosome-scale Elaeis guineensis and E. oleifera assemblies: comparative genomics of oil palm and other Arecaceae.G3 (Bethesda, Md.) · 2024Article
- Unveiling the Secrets of Oil Palm Genetics: A Look into Omics Research.International journal of molecular sciences · 2024Review
- Multi-Omics Approaches in Oil Palm Research: A Comprehensive Review of Metabolomics, Proteomics, and Transcriptomics Based on Low-Temperature Stress.International journal of molecular sciences · 2024Review
- A Chromosome-level Reference Genome of African Oil Palm Provides Insights into Its Divergence and Stress Adaptation.Genomics, proteomics & bioinformatics · 2023Article
- EgSPEECHLESS Responses to Salt Stress by Regulating Stomatal Development in Oil Palm.International journal of molecular sciences · 2022Article
- Phenomics, genomics of oil palm (Physiology and molecular biology of plants : an international journal of functional plant biology · 2021Review
- Molecular approaches for improving oil palm for oil.Molecular breeding : new strategies in plant improvement · 2021Review
- Anchoring a genetic map of an interspecific backcross two family to the genome builds of Elaeis.Journal of genetics · 2021Article
- Linkage-based genome assembly improvement of oil palm (Elaeis guineensis).Scientific reports · 2019Article
- Article
- Cloning and characterization of EgGDSL, a gene associated with oil content in oil palm.Scientific reports · 2018Article
- Developing genome-wide SNPs and constructing an ultrahigh-density linkage map in oil palm.Scientific reports · 2018Article
- Is It Ordered Correctly? Validating Genome Assemblies by Optical Mapping.The Plant cell · 2018Review
- Comparative genomic and transcriptomic analysis of selected fatty acid biosynthesis genes and CNL disease resistance genes in oil palm.PloS one · 2018Article
- Evidence-based gene models for structural and functional annotations of the oil palm genome.Biology direct · 2017Article
- Genome-wide identification of markers for selecting higher oil content in oil palm.BMC plant biology · 2017Article
- Transcriptome and functional analysis reveals hybrid vigor for oil biosynthesis in oil palm.Scientific reports · 2017Article
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Authors and funding
14 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Oil palm is the world's leading source of vegetable oil and fat. Dura, Pisifera and Tenera are three forms of oil palm. The genome sequence of Pisifera is available whereas the Dura form has not been sequenced yet. We sequenced the genome of one elite Dura palm, and re-sequenced 17 palm genomes. The assemble genome sequence of the elite Dura tree contained 10,971 scaffolds and was 1.701 Gb in length, covering 94.49% of the oil palm genome. 36,105 genes were predicted. Re-sequencing of 17 additional palm trees identified 18.1 million SNPs. We found high genetic variation among palms from different geographical regions, but lower variation among Southeast Asian Dura and Pisifera palms. We mapped 10,000 SNPs on the linkage map of oil palm. In addition, high linkage disequilibrium (LD) was detected in the oil palms used in breeding populations of Southeast Asia, suggesting that LD mapping is likely to be practical in this important oil crop. Our data provide a valuable resource for accelerating genetic improvement and studying the mechanism underlying phenotypic variations of important oil palm traits.
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