ArticleBioinformatics (Oxford, England)2016
LEVER: software tools for segmentation, tracking and lineaging of proliferating cells.
Article in Bioinformatics (Oxford, England), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
23 citing papers in PubMed.
- Automatic detection of spatio-temporal signaling patterns in cell collectives.The Journal of cell biology · 2023Article
- The Cluster Structure Function.IEEE transactions on pattern analysis and machine intelligence · 2023Article
- Assessing cell migration in hydrogels: An overview of relevant materials and methods.Materials today. Bio · 2023Review
- Cell region fingerprints enable highly precise single-cell tracking and lineage reconstruction.Nature methods · 2022Article
- AI-Driven Cell Tracking to Enable High-Throughput Drug Screening Targeting Airway Epithelial Repair for Children with Asthma.Journal of personalized medicine · 2022Article
- Live Plant Cell Tracking: Fiji plugin to analyze cell proliferation dynamics and understand morphogenesis.Plant physiology · 2022Article
- From Seeing to Simulating: A Survey of Imaging Techniques and Spatially-Resolved Data for Developing Multiscale Computational Models of Liver Regeneration.Frontiers in systems biology · 2022Article
- LEVERSC: Cross-Platform Scriptable Multichannel 3-D Visualization for Fluorescence Microscopy Images.Frontiers in bioinformatics · 2022Article
- Interpretable deep learning uncovers cellular properties in label-free live cell images that are predictive of highly metastatic melanoma.Cell systems · 2021Article
- Calcium-vesicles perform active diffusion in the sea urchin embryo during larval biomineralization.PLoS computational biology · 2021Article
- Human Serum Enhances Biomimicry of Engineered Tissue Models of Bone and Cancer.Frontiers in bioengineering and biotechnology · 2021Article
- Probing pluripotency gene regulatory networks with quantitative live cell imaging.Computational and structural biotechnology journal · 2020Review
- Hydra image processor: 5-D GPU image analysis library with MATLAB and python wrappers.Bioinformatics (Oxford, England) · 2019Article
- From observing to predicting single-cell structure and function with high-throughput/high-content microscopy.Essays in biochemistry · 2019Review
- Separating Touching Cells Using Pixel Replicated Elliptical Shape Models.IEEE transactions on medical imaging · 2019Article
- eDetect: A Fast Error Detection and Correction Tool for Live Cell Imaging Data Analysis.iScience · 2019Article
- Contact guidance is cell cycle-dependent.APL bioengineering · 2018Article
- Syntaphilin Ubiquitination Regulates Mitochondrial Dynamics and Tumor Cell Movements.Cancer research · 2018Article
- Non-monotonic Changes in Progenitor Cell Behavior and Gene Expression during Aging of the Adult V-SVZ Neural Stem Cell Niche.Stem cell reports · 2017Article
- Machine learning applications in cell image analysis.Immunology and cell biology · 2017Review
Corrections and comments
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Authors and funding
5 authors.
Funding
Abstract
The analysis of time-lapse images showing cells dividing to produce clones of related cells is an important application in biological microscopy. Imaging at the temporal resolution required to establish accurate tracking for vertebrate stem or cancer cells often requires the use of transmitted light or phase-contrast microscopy. Processing these images requires automated segmentation, tracking and lineaging algorithms. There is also a need for any errors in the automated processing to be easily identified and quickly corrected. We have developed LEVER, an open source software tool that combines the automated image analysis for phase-contrast microscopy movies with an easy-to-use interface for validating the results and correcting any errors. AVAILABILITY AND IMPLEMENTATION: LEVER is available free and open source, licensed under the GNU GPLv3. Details on obtaining and using LEVER are available at http://n2t.net/ark:/87918/d9rp4t CONTACT: acohen@coe.drexel.edu.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.