Evidence map›Paper›PMID 27423867›Full record

ArticleMethods in enzymology2016

Current Proteomic Methods to Investigate the Dynamics of Histone Turnover in the Central Nervous System.

L A Farrelly, B D Dill, H Molina, M R Birtwistle, I Maze

Open access · greenAbstract read
In one paragraph

Article in Methods in enzymology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

L A FarrellyIcahn School of Medicine at Mount Sinai, New York, NY, United States.
B D DillThe Rockefeller University Proteomics Resource Center, The Rockefeller University, New York, NY, United States.
H MolinaThe Rockefeller University Proteomics Resource Center, The Rockefeller University, New York, NY, United States.
M R BirtwistleIcahn School of Medicine at Mount Sinai, New York, NY, United States.
I MazeIcahn School of Medicine at Mount Sinai, New York, NY, United States. Electronic address: ian.maze@mssm.edu.
Icahn School of Medicine at Mount Sinai · USRockefeller University · US

Funding

REPRESSIVE HISTONE AND DNA METHYLATION IN RODENT DEPRESSION MODELSP50MH096890 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI NESTLER, ERIC J. · 2012 to 2021
$20.2M
Molecular studies of neural histone monoaminylation in normal and aberrant brain plasticityR01MH116900 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Ian S. Maze · 2019 to 2026
$4.7M
Roles for histone monoaminylation in cocaine-induced transcriptional and behavioral plasticityDP1DA042078 · NIDA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI MAZE, IAN S. · 2016 to 2021
$3.2M
Predicting the Heterogeneity of Cell-Fate DecisionsR01GM104184 · NIGMS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI BIRTWISTLE, MARC R. · 2014 to 2018
$1.8M
Application of intein-based chemical methods to directly manipulate neuronal histone modifications in rodent models of addictionR21DA044767 · NIDA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI DAVID-SHTERNBERG, YAEL E, MAZE, IAN S. · 2018 to 2019
$444k
NIDA NIH HHS DP1 DA042078NIDA NIH HHS R21 DA044767NIGMS NIH HHS R01 GM104184NIMH NIH HHS P50 MH096890NIMH NIH HHS R01 MH116900
6 · The paper itself

Abstract

Characterizing the dynamic behavior of nucleosomes in the central nervous system is vital to our understanding of brain-specific chromatin-templated processes and their roles in transcriptional plasticity. Histone turnover-the complete loss of old, and replacement by new, nucleosomal histones-is one such phenomenon that has recently been shown to be critical for cell-type-specific transcription in brain, synaptic plasticity, and cognition. Such revelations that histones, long believed to static proteins in postmitotic cells, are highly dynamic in neurons were only possible owing to significant advances in analytical chemistry-based techniques, which now provide a platform for investigations of histone dynamics in both healthy and diseased tissues. Here, we discuss both past and present proteomic methods (eg, mass spectrometry, human "bomb pulse labeling") for investigating histone turnover in brain with the hope that such information may stimulate future investigations of both adaptive and aberrant forms of "neuroepigenetic" plasticity.

Indexed as

Amino Acid SequenceAnimalsAutopsyBrainBrain ChemistryHistonesHumansMass SpectrometryProteomicsHistonesBomb pulse labelingChromatin dynamicsH3.3Histone turnoverMass spectrometryNeuroepigeneticsProteomicsSILAC

Identifiers

PMID27423867
PMCPMC4969624
OpenAlexW2491778418

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.