Evidence map›Paper›PMID 27422285›Full record

ArticleBMC plant biology2016

Identification of single nucleotide polymorphism markers associated with resistance to bruchids (Callosobruchus spp.) in wild mungbean (Vigna radiata var. sublobata) and cultivated V. radiata through genotyping by sequencing and quantitative trait locus analysis.

Roland Schafleitner, Shu-Mei Huang, Shui-Hui Chu, Jo-Yi Yen, Chen-Yu Lin, Miao-Rong Yan, Bharath Krishnan, Mao-Sen Liu, Hsiao-Feng Lo, Chien-Yu Chen and 6 more

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
11.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 65 citations in OpenAlex.

  1. Article
  2. Genetic Analyses of Mungbean [Plants (Basel, Switzerland) · 2023
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  19. Mechanism of Resistance in Mungbean [Frontiers in plant science · 2017
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 3 countries.

Roland SchafleitnerBiotechnology/Molecular Breeding, World Vegetable Center, 60 Yi Min Liao, Shanhua, Tainan, 74151, Taiwan. roland.schafleitner@worldveg.org.
Shu-Mei HuangBiotechnology/Molecular Breeding, World Vegetable Center, 60 Yi Min Liao, Shanhua, Tainan, 74151, Taiwan.
Shui-Hui ChuBiotechnology/Molecular Breeding, World Vegetable Center, 60 Yi Min Liao, Shanhua, Tainan, 74151, Taiwan.
Jo-Yi YenLegume Breeding, World Vegetable Center, 60 Yi Min Liao, Shanhua, Tainan, 74151, Taiwan.
Chen-Yu LinBiotechnology/Molecular Breeding, World Vegetable Center, 60 Yi Min Liao, Shanhua, Tainan, 74151, Taiwan.
Miao-Rong YanLegume Breeding, World Vegetable Center, 60 Yi Min Liao, Shanhua, Tainan, 74151, Taiwan.
Bharath KrishnanInformation Technology, World Vegetable Center, 60 Yi Min Liao, Shanhua, Tainan, 74151, Taiwan.
Mao-Sen LiuInstitute of Plant and Microbial Biology, Academia Sinica, No. 128, Sec. 2, Academia Road, Nankang, Taipei, 115, Taiwan.
Hsiao-Feng LoHorticulture and Landscape Architecture / Horticulture Section, Experimental Farm, College of Bio-Resources and Agriculture National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei, 106, Taiwan.
Chien-Yu ChenDepartment of Bio-Industrial Mechatronics Engineering, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei, 106, Taiwan.
Long-Fang O ChenInstitute of Plant and Microbial Biology, Academia Sinica, No. 128, Sec. 2, Academia Road, Nankang, Taipei, 115, Taiwan.
Dung-Chi WuDepartment of Bio-Industrial Mechatronics Engineering, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei, 106, Taiwan.
Thu-Giang Thi BuiDivision of Agricultural Biodiversity, Plant Resources Center, Plant Resources Center, Vietnam Academy of Agriculture Sciences, An Khanh, Hoai Duc, Ha Noi, Vietnam.
Srinivasan RamasamyEntomology, World Vegetable Center, 60 Yi Min Liao, Shanhua, Tainan, 74151, Taiwan.
Chih-Wei TungDepertment of Agronomy, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei, 106, Taiwan.
Ramakrishnan NairLegume Breeding, World Vegetable Center South Asia, ICRISAT Campus, Patancheru, 502 324, Hyderabad, Telangana, India.
World Vegetable Center · TWNational Taiwan University · TWInstitute of Plant and Microbial Biology, Academia Sinica · TWInternational Crops Research Institute for the Semi-Arid Tropics · INVietnam Academy of Agricultural Sciences · VN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundBruchid beetles are an important storage pest of grain legumes. Callosobruchus sp. infect mungbean (Vigna radiata) at low levels in the field, multiply during grain storage and can destroy seed stocks in a few months. Resistance against bruchid beetles has been found in wild mungbean V. radiata var. sublobata TC1966 and in cultivated mungbean line V2802.

resultsBruchid resistance data were obtained from recombinant inbred line populations TC1966 (V. radiata var. sublobata) × NM92 (F12) and V2802 (V. radiata) × NM94 (F7). More than 6,000 single nucleotide polymorphic markers were generated through genotyping by sequencing (GBS) for each of these populations and were used to map bruchid resistance genes. One highly significant quantitative trait locus (QTL) associated with bruchid resistance was mapped to chromosome 5 on genetic maps of both populations, suggesting that TC1966 and V2802 contain the same resistance locus. Co-segregation of all markers associated with resistance indicated the presence of only one major resistance QTL on chromosome 5, while QTL analysis based on physical map positions of the markers suggested the presence of multiple QTLs on different chromosomes. The diagnostic capacity of the identified molecular markers located in the QTL to correctly predict resistance was up to 100 %.

conclusionsMolecular markers tightly linked to bruchid resistance loci of two different mungbean resistance sources were developed and validated. These markers are highly useful for developing resistant lines.

Indexed as

Polymorphism, Single NucleotideQuantitative Trait LociAnimalsColeopteraGenotypePlant DiseasesSequence Analysis, DNAVigna

Identifiers

PMID27422285
PMCPMC4946214
OpenAlexW2473687257

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.