Evidence map›Paper›PMID 27420374›Full record

ArticleBioarchitecture2016

The impact of tropomyosins on actin filament assembly is isoform specific.

Miro Janco, Teresa T Bonello, Alex Byun, Adelle C F Coster, Helene Lebhar, Irina Dedova, Peter W Gunning, Till Böcking

Open access · bronzeAbstract read
In one paragraph

Article in Bioarchitecture, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 66 citations in OpenAlex.

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  12. Cytoskeleton remodeling mediated by circRNA-YBX1 phase separation suppresses the metastasis of liver cancer.Proceedings of the National Academy of Sciences of the United States of America · 2023
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  15. International journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Miro Jancoa Single Molecule Science , School of Medical Sciences and ARC Centre of Excellence in Advanced Molecular Imaging, University of New South Wales , Sydney , NSW , Australia.
Teresa T Bonellob School of Medical Sciences , University of New South Wales , Sydney , NSW , Australia.
Alex Byunb School of Medical Sciences , University of New South Wales , Sydney , NSW , Australia.
Adelle C F Costerc School of Mathematics and Statistics , University of New South Wales , Sydney , NSW , Australia.
Helene Lebhard School of Biotechnology and Biomolecular Sciences , University of New South Wales , Sydney , NSW , Australia.
Irina Dedovab School of Medical Sciences , University of New South Wales , Sydney , NSW , Australia.
Peter W Gunningb School of Medical Sciences , University of New South Wales , Sydney , NSW , Australia.
Till Böckinga Single Molecule Science , School of Medical Sciences and ARC Centre of Excellence in Advanced Molecular Imaging, University of New South Wales , Sydney , NSW , Australia.
UNSW Sydney · AUARC Centre of Excellence in Advanced Molecular Imaging · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tropomyosin (Tpm) is an α helical coiled-coil dimer that forms a co-polymer along the actin filament. Tpm is involved in the regulation of actin's interaction with binding proteins as well as stabilization of the actin filament and its assembly kinetics. Recent studies show that multiple Tpm isoforms also define the functional properties of distinct actin filament populations within a cell. Subtle structural variations within well conserved Tpm isoforms are the key to their functional specificity. Therefore, we purified and characterized a comprehensive set of 8 Tpm isoforms (Tpm1.1, Tpm1.12, Tpm1.6, Tpm1.7, Tpm1.8, Tpm2.1, Tpm3.1, and Tpm4.2), using well-established actin co-sedimentation and pyrene fluorescence polymerization assays. We observed that the apparent affinity (Kd(app)) to filamentous actin varied in all Tpm isoforms between ∼0.1-5 μM with similar values for both, skeletal and cytoskeletal actin filaments. The data did not indicate any correlation between affinity and size of Tpm molecules, however high molecular weight (HMW) isoforms Tpm1.1, Tpm1.6, Tpm1.7 and Tpm2.1, showed ∼3-fold higher cooperativity compared to low molecular weight (LMW) isoforms Tpm1.12, Tpm1.8, Tpm3.1, and Tpm4.2. The rate of actin filament elongation in the presence of Tpm2.1 increased, while all other isoforms decreased the elongation rate by 27-85 %. Our study shows that the biochemical properties of Tpm isoforms are finely tuned and depend on sequence variations in alternatively spliced regions of Tpm molecules.

Indexed as

ExonsActin CytoskeletonActinsAlternative SplicingAmino Acid SequenceAnimalsBinding SitesCloning, MolecularEscherichia coliGene ExpressionHumansKineticsMolecular WeightPolymerizationProtein BindingProtein IsoformsActinsProtein IsoformsRecombinant ProteinsTropomyosinactinactin affinityactin elongationco-sedimentationisoformstropomyosin

Identifiers

PMID27420374
PMCPMC6085118
OpenAlexW2467261139

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.