Evidence map›Paper›PMID 27420112›Full record

ArticleRNA biology2016

Regulation of a polyamine transporter by the conserved 3' UTR-derived sRNA SorX confers resistance to singlet oxygen and organic hydroperoxides in Rhodobacter sphaeroides.

Tao Peng, Bork A Berghoff, Jeong-Il Oh, Lennart Weber, Jasmin Schirmer, Johannes Schwarz, Jens Glaeser, Gabriele Klug

Open access · bronzeAbstract read
In one paragraph

Article in RNA biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 40 citations in OpenAlex.

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  5. A Small RNA, UdsC, Interacts with the RInternational journal of molecular sciences · 2022
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  14. Prevalence of small base-pairing RNAs derived from diverse genomic loci.Biochimica et biophysica acta. Gene regulatory mechanisms · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Tao Penga Institut für Mikrobiologie und Molekularbiologie, IFZ, Universität Giessen , Giessen , Germany.
Bork A Berghoffa Institut für Mikrobiologie und Molekularbiologie, IFZ, Universität Giessen , Giessen , Germany.
Jeong-Il Ohb Department of Microbiology , Pusan National University , Busan , Korea.
Lennart Webera Institut für Mikrobiologie und Molekularbiologie, IFZ, Universität Giessen , Giessen , Germany.
Jasmin Schirmera Institut für Mikrobiologie und Molekularbiologie, IFZ, Universität Giessen , Giessen , Germany.
Johannes Schwarza Institut für Mikrobiologie und Molekularbiologie, IFZ, Universität Giessen , Giessen , Germany.
Jens Glaesera Institut für Mikrobiologie und Molekularbiologie, IFZ, Universität Giessen , Giessen , Germany.
Gabriele Kluga Institut für Mikrobiologie und Molekularbiologie, IFZ, Universität Giessen , Giessen , Germany.
University of Giessen · DEPusan National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Singlet oxygen is generated by bacteriochlorophylls when light and oxygen are simultaneously present in Rhodobacter sphaeroides. Singlet oxygen triggers a specific response that is partly regulated by the alternative sigma factor RpoHI/HII. The sRNA RSs2461 has previously been identified as an RpoHI/HII-dependent sRNA and is derived from the 3' UTR of the mRNA for an OmpR-type transcriptional regulator. Similar to the RpoHI/HII-dependent CcsR and SorY sRNAs, RSs2461 affects the resistance of R. sphaeroides against singlet oxygen and was therefore renamed here SorX. Furthermore, SorX has a strong impact on resistance against organic hydroperoxides that usually occur as secondary damages downstream of singlet oxygen. The 75-nt SorX 3' fragment, which is generated by RNase E cleavage and highly conserved among related species, represents the functional entity. A target search identified potA mRNA, which encodes a subunit of a polyamine transporter, as a direct SorX target and stress resistance via SorX could be linked to potA. The PotABCD transporter is an uptake system for spermidine in E. coli. While spermidine is generally described as beneficial during oxidative stress, we observed significantly increased sensitivity of R. sphaeroides to organic hydroperoxides in the presence of spermidine. We therefore propose that the diminished import of spermidine, due to down-regulation of potA by SorX, counteracts oxidative stress. Together with results from other studies this underlines the importance of regulated transport to bacterial stress defense.

Indexed as

3' Untranslated RegionsBacterial ProteinsDrug Resistance, BacterialGene Expression Regulation, BacterialOxidative StressPeroxidesRhodobacter sphaeroidesRNA, BacterialSinglet OxygenSpermidine3' Untranslated RegionsBacterial ProteinsPeroxidesRNA, BacterialSinglet OxygenSpermidine3′ UTR-derivedHfqorganic hydroperoxidepolyamine transporterpotARhodobacter sphaeroidessinglet oxygensmall RNA

Identifiers

PMID27420112
PMCPMC5056773
OpenAlexW2467547184

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.