Evidence map›Paper›PMID 27420095›Full record

ArticleToxins2016

Insights into the Evolution of a Snake Venom Multi-Gene Family from the Genomic Organization of Echis ocellatus SVMP Genes.

Libia Sanz, Juan J Calvete

Open access · goldAbstract readComparative Study
In one paragraph

Article in Toxins, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Tracking the recruitment and evolution of snake toxins using the evolutionary context provided by theProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  6. Article
  7. Review
  8. The origin and diversification of a novel protein family in venomous snakes.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  9. Structures of N-Glycans ofMolecular & cellular proteomics : MCP · 2018
    Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Libia SanzLaboratorio de Venómica Estructural y Funcional, Instituto de Biomedicina de Valencia, Consejo Superior de Investigaciones Científicas, Jaume Roig 11, 46010 València, Spain. libia.sanz@ibv.csic.es.
Juan J CalveteLaboratorio de Venómica Estructural y Funcional, Instituto de Biomedicina de Valencia, Consejo Superior de Investigaciones Científicas, Jaume Roig 11, 46010 València, Spain. jcalvete@ibv.csic.es.
Instituto de Biomedicina de Valencia · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The molecular events underlying the evolution of the Snake Venom Metalloproteinase (SVMP) family from an A Disintegrin And Metalloproteinase (ADAM) ancestor remain poorly understood. Comparative genomics may provide decisive information to reconstruct the evolutionary history of this multi-locus toxin family. Here, we report the genomic organization of Echis ocellatus genes encoding SVMPs from the PII and PI classes. Comparisons between them and between these genes and the genomic structures of Anolis carolinensis ADAM28 and E. ocellatus PIII-SVMP EOC00089 suggest that insertions and deletions of intronic regions played key roles along the evolutionary pathway that shaped the current diversity within the multi-locus SVMP gene family. In particular, our data suggest that emergence of EOC00028-like PI-SVMP from an ancestral PII(e/d)-type SVMP involved splicing site mutations that abolished both the 3' splice AG acceptor site of intron 12* and the 5' splice GT donor site of intron 13*, and resulted in the intronization of exon 13* and the consequent destruction of the structural integrity of the PII-SVMP characteristic disintegrin domain.

Indexed as

Evolution, MolecularGenomeMultigene FamilyADAM ProteinsAnimalsExonsGene FusionIntronsMutationReptilian ProteinsRNA Splice SitesViperidaeViper VenomsADAM ProteinsReptilian ProteinsRNA Splice SitesViper Venomsgene duplicationgenomic organization of SVMP genesintronic retroelementsintronizationPII-SVMPPI-SVMPsnake venom metalloproteinaseSnake venom toxin multi-gene family

Identifiers

PMID27420095
PMCPMC4963849
OpenAlexW2465312412

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.