Evidence map›Paper›PMID 27418822›Full record

ArticleInternational journal of chronic obstructive pulmonary disease2016

Reduced sputum expression of interferon-stimulated genes in severe COPD.

Clarissa Hilzendeger, Jane da Silva, Monique Henket, Florence Schleich, Jean Louis Corhay, Tatiana Kebadze, Michael R Edwards, Patrick Mallia, Sebastian L Johnston, Renaud Louis

Open access · goldAbstract read
In one paragraph

Article in International journal of chronic obstructive pulmonary disease, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.8field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 22 citations in OpenAlex.

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  14. Innate Immune Responses and Pulmonary Diseases.Advances in experimental medicine and biology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Clarissa HilzendegerDepartment of Respiratory Medicine, Centre Hospitalier Universitaire (CHU) Liege, Groupe Interdisciplinaire de Génoprotéomique Appliquée (GIGA) I University of Liege, Belgium.
Jane da SilvaDepartment of Medicine, Post-graduate Program in Health Sciences, University of Southern Santa Catarina, Palhoça-SC, Brazil.
Monique HenketDepartment of Respiratory Medicine, Centre Hospitalier Universitaire (CHU) Liege, Groupe Interdisciplinaire de Génoprotéomique Appliquée (GIGA) I University of Liege, Belgium.
Florence SchleichDepartment of Respiratory Medicine, Centre Hospitalier Universitaire (CHU) Liege, Groupe Interdisciplinaire de Génoprotéomique Appliquée (GIGA) I University of Liege, Belgium.
Jean Louis CorhayDepartment of Respiratory Medicine, Centre Hospitalier Universitaire (CHU) Liege, Groupe Interdisciplinaire de Génoprotéomique Appliquée (GIGA) I University of Liege, Belgium.
Tatiana KebadzeAirway Disease Division, Airway Disease Infection Section, National Heart and Lung Institute, Imperial College, London, UK.
Michael R EdwardsAirway Disease Division, Airway Disease Infection Section, National Heart and Lung Institute, Imperial College, London, UK.
Patrick MalliaAirway Disease Division, Airway Disease Infection Section, National Heart and Lung Institute, Imperial College, London, UK.
Sebastian L JohnstonAirway Disease Division, Airway Disease Infection Section, National Heart and Lung Institute, Imperial College, London, UK.
Renaud LouisDepartment of Respiratory Medicine, Centre Hospitalier Universitaire (CHU) Liege, Groupe Interdisciplinaire de Génoprotéomique Appliquée (GIGA) I University of Liege, Belgium.
Centre Hospitalier Universitaire de Liège · BEUniversity of Liège · BELaboratoire Interdisciplinaire de Physique · FRUniversidade do Sul de Santa Catarina · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundExacerbations of COPD are frequent and commonly triggered by respiratory tract infections. The purpose of our study was to investigate innate immunity in stable COPD patients.

methodsInduced sputum was collected from 51 stable consecutive COPD patients recruited from the COPD Clinic of CHU Liege and 35 healthy subjects. Expression of interferons beta (IFN-β) and lambda1 (IL-29), IFN-stimulated genes (ISGs) MxA, OAS, and viperin were measured in total sputum cells by reverse transcription quantitative polymerase chain reaction (RT-qPCR). The presence of Picornaviruses was assessed by RT-PCR, while potential pathogenic microorganisms (PPM) were identified by sputum bacteriology.

resultsExpression of IL-29 was found in 16 of 51 COPD patients (31%) and in nine of 35 healthy subjects (26%), while IFN-β was detected in six of 51 COPD patients (12%) and in two of 35 healthy subjects (6%). ISGs were easily detectable in both groups. In the whole group of COPD patients, OAS expression was decreased (P<0.05), while that of viperin was increased (P<0.01) compared to healthy subjects. No difference was found with respect to MxA. COPD patients from group D of Global Initiative for Chronic Obstructive Lung Disease (GOLD) had reduced expression of all three ISGs (P<0.01 for MxA, P<0.05 for OAS, and P<0.01 for viperin) as compared to those of group B patients. Picornaviruses were detected in eight of 51 (16%) COPD patients vs four of 33 (12%) healthy subjects, while PPM were detected in seven of 39 (18%) COPD patients and associated with raised sputum neutrophil counts. IFN-β expression was raised when either picornavirus or PPM were detected (P=0.06), but no difference was seen regarding IL-29 or ISGs.

conclusionISGs expression was reduced in severe COPD that may favor exacerbation and contribute to disease progress by altering response to infection.

Indexed as

2',5'-Oligoadenylate SynthetaseAgedBelgiumCase-Control StudiesCross-Sectional StudiesDisease ProgressionDNA, ViralFemaleGenetic MarkersHost-Pathogen InteractionsHumansImmunity, InnateInterferon-betaInterferon LambdaInterferonsInterleukins2',5'-Oligoadenylate SynthetaseDNA, ViralGenetic MarkersInterferon-betaInterferon Lambdainterferon-lambda, humanInterferonsInterleukinsMX1 protein, humanMyxovirus Resistance ProteinsOxidoreductases Acting on CH-CH Group DonorsProteinsRSAD2 protein, humanViperin ProteinCOPDinnate immunityinterferon-stimulated genesinterferon-βinterferon-λ1

Identifiers

PMID27418822
PMCPMC4934534
OpenAlexW2464135051

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.