Evidence map›Paper›PMID 27418677›Full record

ArticleNucleic acids research2016

PABP enhances release factor recruitment and stop codon recognition during translation termination.

Alexandr Ivanov, Tatyana Mikhailova, Boris Eliseev, Lahari Yeramala, Elizaveta Sokolova, Denis Susorov, Alexey Shuvalov, Christiane Schaffitzel, Elena Alkalaeva

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
83citing papers in PubMed, 1 pooled it
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

83 citing papers in PubMed, 1 synthesis or guideline pooled it, 129 citations in OpenAlex.

  1. Pooled it
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23 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Alexandr IvanovEngelhardt Institute of Molecular Biology, the Russian Academy of Sciences, 119991 Moscow, Russia Faculty of Bioengineering and Bioinformatics, M.V. Lomonosov Moscow State University, 119992 Moscow, Russia.
Tatyana MikhailovaEngelhardt Institute of Molecular Biology, the Russian Academy of Sciences, 119991 Moscow, Russia.
Boris EliseevEuropean Molecular Biology Laboratory, Grenoble Outstation, 71 Avenue des Martyrs, 38042 Grenoble, France.
Lahari YeramalaEuropean Molecular Biology Laboratory, Grenoble Outstation, 71 Avenue des Martyrs, 38042 Grenoble, France.
Elizaveta SokolovaEngelhardt Institute of Molecular Biology, the Russian Academy of Sciences, 119991 Moscow, Russia.
Denis SusorovEngelhardt Institute of Molecular Biology, the Russian Academy of Sciences, 119991 Moscow, Russia Faculty of Bioengineering and Bioinformatics, M.V. Lomonosov Moscow State University, 119992 Moscow, Russia.
Alexey ShuvalovEngelhardt Institute of Molecular Biology, the Russian Academy of Sciences, 119991 Moscow, Russia.
Christiane SchaffitzelEuropean Molecular Biology Laboratory, Grenoble Outstation, 71 Avenue des Martyrs, 38042 Grenoble, France School of Biochemistry, University of Bristol, BS8 1TD, UK schaffitzel@embl.fr.
Elena AlkalaevaEngelhardt Institute of Molecular Biology, the Russian Academy of Sciences, 119991 Moscow, Russia alkalaeva@eimb.ru.
Engelhardt Institute of Molecular Biology · RUEuropean Molecular Biology Laboratory · FRLomonosov Moscow State University · RU

Funding

European Research Council 281331
6 · The paper itself

Abstract

Poly(A)-binding protein (PABP) is a major component of the messenger RNA-protein complex. PABP is able to bind the poly(A) tail of mRNA, as well as translation initiation factor 4G and eukaryotic release factor 3a (eRF3a). PABP has been found to stimulate translation initiation and to inhibit nonsense-mediated mRNA decay. Using a reconstituted mammalian in vitro translation system, we show that PABP directly stimulates translation termination. PABP increases the efficiency of translation termination by recruitment of eRF3a and eRF1 to the ribosome. PABP's function in translation termination depends on its C-terminal domain and its interaction with the N-terminus of eRF3a. Interestingly, we discover that full-length eRF3a exerts a different mode of function compared to its truncated form eRF3c, which lacks the N-terminal domain. Pre-association of eRF3a, but not of eRF3c, with pre-termination complexes (preTCs) significantly increases the efficiency of peptidyl-tRNA hydrolysis by eRF1. This implicates new, additional interactions of full-length eRF3a with the ribosomal preTC. Based on our findings, we suggest that PABP enhances the productive binding of the eRF1-eRF3 complex to the ribosome, via interactions with the N-terminal domain of eRF3a which itself has an active role in translation termination.

Indexed as

Codon, TerminatorHumansHydrolysisModels, BiologicalPeptide Chain Termination, TranslationalPeptide Termination FactorsPoly(A)-Binding ProteinsProtein BindingRNA, Transfer, Amino AcylCodon, Terminatorpeptide-chain-release factor 3Peptide Termination FactorsPoly(A)-Binding ProteinsRNA, Transfer, Amino AcyltRNA, peptidyl-

Identifiers

PMID27418677
PMCPMC5027505
OpenAlexW2466636931

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.