Evidence map›Paper›PMID 27417136›Full record

ArticleThe Journal of biological chemistry2016

An Internal Disulfide Locks a Misfolded Aggregation-prone Intermediate in Cataract-linked Mutants of Human γD-Crystallin.

Eugene Serebryany, Jaie C Woodard, Bharat V Adkar, Mohammed Shabab, Jonathan A King, Eugene I Shakhnovich

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 77 citations in OpenAlex.

  1. Article
  2. Human Crystallin Variation and Cataract.Investigative ophthalmology & visual science · 2026
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Eugene SerebryanyFrom the Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139 and.
Jaie C Woodardthe Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138.
Bharat V Adkarthe Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138.
Mohammed ShababFrom the Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139 and.
Jonathan A KingFrom the Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139 and jaking@mit.edu.
Eugene I Shakhnovichthe Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138 shakhnovich@chemistry.harvard.edu.
Harvard University · USMassachusetts Institute of Technology · US

Funding

MOLECULAR BIOPHYSICS TRAINING GRANTT32GM008313 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI MURTHY, VENKATESH N · 1989 to 2023
$14.6M
Human gammaD-Crystallin Folding Misfolding &Fibril FormR01EY015834 · NEI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI KING, JONATHAN ALAN · 2005 to 2014
$3.5M
Structure and Interactions of Conformational Intermediates in gamma-D Crystallin Aggregation, and Their Targeting for Cataract PreventionR01EY030444 · NEI · HARVARD UNIVERSITY · PI SHAKHNOVICH, EUGENE I · 2020 to 2024
$2.1M
Study of phenotypic and fitness effects of non-functional protein interactions inR01GM111955 · NIGMS · HARVARD UNIVERSITY · PI SHAKHNOVICH, EUGENE I · 2014 to 2017
$1.4M
NEI NIH HHS R01 EY015834NEI NIH HHS R01 EY030444NIGMS NIH HHS R01 GM111955NIGMS NIH HHS T32 GM008313
6 · The paper itself

Abstract

Considerable mechanistic insight has been gained into amyloid aggregation; however, a large number of non-amyloid protein aggregates are considered "amorphous," and in most cases, little is known about their mechanisms. Amorphous aggregation of γ-crystallins in the eye lens causes cataract, a widespread disease of aging. We combined simulations and experiments to study the mechanism of aggregation of two γD-crystallin mutants, W42R and W42Q: the former a congenital cataract mutation, and the latter a mimic of age-related oxidative damage. We found that formation of an internal disulfide was necessary and sufficient for aggregation under physiological conditions. Two-chain all-atom simulations predicted that one non-native disulfide in particular, between Cys(32) and Cys(41), was likely to stabilize an unfolding intermediate prone to intermolecular interactions. Mass spectrometry and mutagenesis experiments confirmed the presence of this bond in the aggregates and its necessity for oxidative aggregation under physiological conditions in vitro Mining the simulation data linked formation of this disulfide to extrusion of the N-terminal β-hairpin and rearrangement of the native β-sheet topology. Specific binding between the extruded hairpin and a distal β-sheet, in an intermolecular chain reaction similar to domain swapping, is the most probable mechanism of aggregate propagation.

Indexed as

CataractMutation, MissenseProtein AggregatesProtein FoldingAmino Acid SubstitutionCysteineDisulfidesgamma-CrystallinsHumansProtein DomainsProtein Structure, SecondaryCRYGD protein, humanCysteineDisulfidesgamma-CrystallinsProtein Aggregatesall-atom Monte Carlo simulationcataractcrystallindisulfidedomain swappingoxidative stressprotein aggregationprotein misfoldingunfolding intermediate

Identifiers

PMID27417136
PMCPMC5009285
OpenAlexW2465646024

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.