ArticlePLoS computational biology2016
Ten Simple Rules for Taking Advantage of Git and GitHub.
Erratum issuedAbstract readEditorial
In one paragraph
Article in PLoS computational biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 67 papers, 1 of them a synthesis that pooled it.
0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed, 1 pooled it
–field-weighted citation impact
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
67 citing papers in PubMed, 1 synthesis or guideline pooled it.
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- Ten simple rules for early-career researchers supervising short-term student projects.PLoS computational biology · 2025Article
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- GitHub enables collaborative and reproducible laboratory research.PLoS biology · 2025Article
- An approach to making life sciences FAIR-FAIR-DS as a tool for Aspergillus fumigatus.Database : the journal of biological databases and curation · 2025Article
- Ten simple rules to complete successfully a computational MSc thesis project.PLoS computational biology · 2025Article
- Reviewability and supportability: New complementary principles to empower research software practices.Computational and structural biotechnology journal · 2024Review
- ENCORE: a practical implementation to improve reproducibility and transparency of computational research.Nature communications · 2024Article
- Ten simple rules for training scientists to make better software.PLoS computational biology · 2024Article
- Ten simple rules for scientific code review.PLoS computational biology · 2024Article
- A how-to guide for code sharing in biology.PLoS biology · 2024Review
- Nine quick tips for open meta-analyses.PLoS computational biology · 2024Article
- Best practices for data management and sharing in experimental biomedical research.Physiological reviews · 2024Review
- Shifting institutional culture to develop climate solutions with Open Science.Ecology and evolution · 2024Article
- The O3 guidelines: open data, open code, and open infrastructure for sustainable curated scientific resources.Scientific data · 2024Article
7 more citing papers are in PubMed but not listed here.
Corrections and comments
- Erratum issued
Authors and funding
15 authors.
Yasset Perez-RiverolEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.
Laurent GattoComputational Proteomics Unit, Cambridge Systems Biology Centre, University of Cambridge, Cambridge, United Kingdom.ORCID 0000-0002-1520-2268
Rui WangEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.
Timo SachsenbergApplied Bioinformatics and Department of Computer Science, University of Tübingen, Tübingen, Germany.
Julian UszkoreitMedizinisches Proteom-Center, Ruhr-Universität Bochum, Bochum, Germany.ORCID 0000-0001-7522-4007
Felipe da Veiga LeprevostDepartment of Pathology, University of Michigan, Ann Arbor, Michigan, United States of America.ORCID 0000-0002-8228-5374
Christian FufezanInstitute of Plant Biology and Biotechnology, University of Münster, Münster, Germany.
Tobias TernentEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.ORCID 0000-0003-0279-7335
Stephen J EglenCentre for Mathematical Sciences, University of Cambridge, Cambridge, United Kingdom.
Daniel S KatzNational Center for Supercomputing Applications and Graduate School of Library and Information Science, University of Illinois, Urbana, Illinois, United States of America.ORCID 0000-0001-5934-7525
Tom J PollardMIT Laboratory for Computational Physiology, Institute for Medical Engineering and Science, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America.ORCID 0000-0002-5676-7898
Alexander KonovalovCentre for Interdisciplinary Research in Computational Algebra, University of St Andrews, St Andrews, United Kingdom.ORCID 0000-0001-5299-3292
Robert M FlightDepartment of Molecular Biology and Biochemistry, Markey Cancer Center, Resource Center for Stable Isotope-Resolved Metabolomics, University of Kentucky, Lexington, Kentucky, United States of America.ORCID 0000-0001-8141-7788
Kai BlinThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Hørsholm, Denmark.ORCID 0000-0003-3764-6051
Juan Antonio VizcaínoEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.ORCID 0000-0002-3905-4335
Funding
COMPUTATIONAL TOOLS FOR MASS SPECTROMETRY-BASED INTERACTOME DATAR01GM094231 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Alexey I Nesvizhskii · 2010 to 2026
$5.4MCritical Care Informatics: Ethical considerations around the use and sharing of health-related dataR01EB017205 · NIBIB · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI CELI, LEO ANTHONY G, MARK, ROGER GREENWOOD · 2014 to 2021
$3.8MBiotechnology and Biological Sciences Research Council BB/I000909/1Biotechnology and Biological Sciences Research Council BB/I00095X/1Biotechnology and Biological Sciences Research Council BB/L002817/1NIBIB NIH HHS R01 EB017205NIGMS NIH HHS R01 GM094231Wellcome Trust
Abstract
PubMed holds no abstract for this paper.
Indexed as
Computational BiologyGuidelines as Topic
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What OpenQuestion holds
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Read underepoch 390
Registered trials
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.