Evidence map›Paper›PMID 27412694›Full record

ArticleMolecular bioSystems2016

Mastitomics, the integrated omics of bovine milk in an experimental model of Streptococcus uberis mastitis: 2. Label-free relative quantitative proteomics.

Manikhandan Mudaliar, Riccardo Tassi, Funmilola C Thomas, Tom N McNeilly, Stefan K Weidt, Mark McLaughlin, David Wilson, Richard Burchmore, Pawel Herzyk, P David Eckersall and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular bioSystems, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
12.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 66 citations in OpenAlex.

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  16. The Analysis of the Ubiquitylomic Responses toJournal of inflammation research · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Manikhandan MudaliarInstitute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Jarret Building, Bearsden Road, Glasgow, G61 1QH, UK. ruth.zadoks@glasgow.ac.uk and Glasgow Polyomics, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, UK.
Riccardo TassiMoredun Research Institute, Pentlands Science Park, Bush Loan, Penicuik, UK.
Funmilola C ThomasInstitute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Jarret Building, Bearsden Road, Glasgow, G61 1QH, UK. ruth.zadoks@glasgow.ac.uk.
Tom N McNeillyMoredun Research Institute, Pentlands Science Park, Bush Loan, Penicuik, UK.
Stefan K WeidtGlasgow Polyomics, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, UK.
Mark McLaughlinSchool of Veterinary Medicine, University of Glasgow, Glasgow, UK.
David WilsonGlasgow Polyomics, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, UK.
Richard BurchmoreGlasgow Polyomics, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, UK and Institute of Infection, Immunity and Inflammation, University of Glasgow, Glasgow, UK.
Pawel HerzykGlasgow Polyomics, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, UK and Institute of Molecular Cell and Systems Biology, University of Glasgow, Glasgow, UK.
P David EckersallInstitute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Jarret Building, Bearsden Road, Glasgow, G61 1QH, UK. ruth.zadoks@glasgow.ac.uk.
Ruth N ZadoksInstitute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Jarret Building, Bearsden Road, Glasgow, G61 1QH, UK. ruth.zadoks@glasgow.ac.uk and Moredun Research Institute, Pentlands Science Park, Bush Loan, Penicuik, UK.
University of Glasgow · GBGlasgow Life · GBMoredun Research Institute · GBDépartement Santé Animale · FRInstitute of Infection and Immunity · CA

Funding

Wellcome TrustWellcome Trust 097821/Z/11/Z
6 · The paper itself

Abstract

Mastitis, inflammation of the mammary gland, is the most common and costly disease of dairy cattle in the western world. It is primarily caused by bacteria, with Streptococcus uberis as one of the most prevalent causative agents. To characterize the proteome during Streptococcus uberis mastitis, an experimentally induced model of intramammary infection was used. Milk whey samples obtained from 6 cows at 6 time points were processed using label-free relative quantitative proteomics. This proteomic analysis complements clinical, bacteriological and immunological studies as well as peptidomic and metabolomic analysis of the same challenge model. A total of 2552 non-redundant bovine peptides were identified, and from these, 570 bovine proteins were quantified. Hierarchical cluster analysis and principal component analysis showed clear clustering of results by stage of infection, with similarities between pre-infection and resolution stages (0 and 312 h post challenge), early infection stages (36 and 42 h post challenge) and late infection stages (57 and 81 h post challenge). Ingenuity pathway analysis identified upregulation of acute phase protein pathways over the course of infection, with dominance of different acute phase proteins at different time points based on differential expression analysis. Antimicrobial peptides, notably cathelicidins and peptidoglycan recognition protein, were upregulated at all time points post challenge and peaked at 57 h, which coincided with 10 000-fold decrease in average bacterial counts. The integration of clinical, bacteriological, immunological and quantitative proteomics and other-omic data provides a more detailed systems level view of the host response to mastitis than has been achieved previously.

Indexed as

ProteomicsStreptococcusAnimalsBiomarkersCattleChromatography, LiquidCluster AnalysisFemaleGene Expression ProfilingGene Expression RegulationMastitis, BovineMilkMilk ProteinsPeptidesPrincipal Component AnalysisSignal TransductionBiomarkersMilk ProteinsPeptides

Identifiers

PMID27412694
PMCPMC5048399
OpenAlexW2471042400

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.