Evidence map›Paper›PMID 27410737›Full record

ArticleBiophysical journal2016

The Water Permeability and Pore Entrance Structure of Aquaporin-4 Depend on Lipid Bilayer Thickness.

Jihong Tong, Zhe Wu, Margaret M Briggs, Klaus Schulten, Thomas J McIntosh

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Mechanosensitive aquaporins.Biophysical reviews · 2023
    Review
  3. Aquaporin Gating: A New Twist to Unravel Permeation through Water Channels.International journal of molecular sciences · 2022
    Review
  4. Review
  5. Article
  6. Review
  7. Review
  8. Microscopic view of lipids and their diverse biological functions.Current opinion in structural biology · 2018
    Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Jihong TongDepartment of Cell Biology, Duke University Medical Center, Durham, North Carolina.
Zhe WuCenter for the Physics of Living Cells and Beckman Institute, University of Illinois Urbana-Champaign, Urbana, Illinois.
Margaret M BriggsDepartment of Cell Biology, Duke University Medical Center, Durham, North Carolina.
Klaus SchultenCenter for the Physics of Living Cells and Beckman Institute, University of Illinois Urbana-Champaign, Urbana, Illinois. Electronic address: kschulte@ks.uiuc.edu.
Thomas J McIntoshDepartment of Cell Biology, Duke University Medical Center, Durham, North Carolina. Electronic address: thomas.mcintosh@duke.edu.
Duke Medical Center · USUniversity of Illinois Urbana-Champaign · USDuke University Hospital · US

Funding

Synthetic Antigen Binder CoreU54GM087519 · NIGMS · UNIVERSITY OF CHICAGO · PI JAVITCH, JONATHAN A · 2010 to 2017
$31.9M
WHOLE CELL SIMULATIONP41GM104601 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI TAJKHORSHID, EMAD · 2012 to 2021
$19.0M
TRP and AQP Channels: Modulation of Function, Raft Location by Membrane LipidsR01GM027278 · NIGMS · DUKE UNIVERSITY · PI MC INTOSH, THOMAS J. · 1985 to 2012
$4.6M
System-Level Simulation of a Bioenergetic MembraneR01GM067887 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI TAJKHORSHID, EMAD · 2003 to 2018
$4.0M
Commodity Hardware Acceleration of Popular Modeling Software for Structural BioloR01GM098243 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI SCHULTEN, KLAUS · 2011 to 2014
$1.2M
NIGMS NIH HHS P41 GM104601NIGMS NIH HHS R01 GM027278NIGMS NIH HHS R01 GM067887NIGMS NIH HHS R01 GM098243NIGMS NIH HHS U54 GM087519
6 · The paper itself

Abstract

Aquaporin-4 (AQP4), the primary water channel in glial cells of the mammalian brain, plays a critical role in water transport in the central nervous system. Previous experiments have shown that the water permeability of AQP4 depends on the cholesterol content in the lipid bilayer, but it was not clear whether changes in permeability were due to direct cholesterol-AQP4 interactions or to indirect effects caused by cholesterol-induced changes in bilayer elasticity or bilayer thickness. To determine the effects resulting only from bilayer thickness, here we use a combination of experiments and simulations to analyze AQP4 in cholesterol-free phospholipid bilayers with similar elastic properties but different hydrocarbon core thicknesses previously determined by x-ray diffraction. The channel (unit) water permeabilities of AQP4 measured by osmotic-gradient experiments were 3.5 ± 0.2 × 10(-13) cm(3)/s (mean ± SE), 3.0 ± 0.3 × 10(-13) cm(3)/s, 2.5 ± 0.2 × 10(-13) cm(3)/s, and 0.9 ± 0.1 × 10(-13) cm(3)/s in bilayers containing (C22:1)(C22:1)PC, (C20:1)(C20:1)PC, (C16:0)(C18:1)PC, and (C13:0)(C13:0)PC, respectively. Channel permeabilities obtained by molecular dynamics (MD) simulations were 3.3 ± 0.1 × 10(-13) cm(3)/s and 2.5 ± 0.1 × 10(-13) cm(3)/s in (C22:1)(C22:1)PC and (C14:0)(C14:0)PC bilayers, respectively. Both the osmotic-gradient and MD-simulation results indicated that AQP4 channel permeability decreased with decreasing bilayer hydrocarbon thickness. The MD simulations also suggested structural modifications in AQP4 in response to changes in bilayer thickness. Although the simulations showed no appreciable changes to the radius of the pore located in the hydrocarbon region of the bilayers, the simulations indicated that there were changes in both pore length and α-helix organization near the cytoplasmic vestibule of the channel. These structural changes, caused by mismatch between the hydrophobic length of AQP4 and the bilayer hydrocarbon thickness, could explain the observed differences in water permeability with changes in bilayer thickness.

Indexed as

Aquaporin 4Lipid BilayersModels, MolecularPermeabilityPorosityProtein ConformationWaterAquaporin 4Lipid BilayersWater

Identifiers

PMID27410737
PMCPMC4944661
OpenAlexW2467560166

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.