Evidence map›Paper›PMID 27409974›Full record

ArticleJournal of the American Chemical Society2016

A HaloTag Anchored Ruler for Week-Long Studies of Protein Dynamics.

Ionel Popa, Jaime Andrés Rivas-Pardo, Edward C Eckels, Daniel J Echelman, Carmen L Badilla, Jessica Valle-Orero, Julio M Fernández

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed.

  1. Article
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  10. Force-regulated chaperone activity of BiP/ERdj3 is opposite to their homologs DnaK/DnaJ.Protein science : a publication of the Protein Society · 2024
    Article
  11. Article
  12. Review
  13. Article
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  16. Allosteric activation of vinculin by talin.Nature communications · 2023
    Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ionel PopaDepartment of Biological Sciences, Columbia University , 1212 Amsterdam Avenue, New York, New York 10027, United States.
Jaime Andrés Rivas-PardoDepartment of Biological Sciences, Columbia University , 1212 Amsterdam Avenue, New York, New York 10027, United States.
Edward C EckelsDepartment of Biological Sciences, Columbia University , 1212 Amsterdam Avenue, New York, New York 10027, United States.
Daniel J EchelmanDepartment of Biological Sciences, Columbia University , 1212 Amsterdam Avenue, New York, New York 10027, United States.
Carmen L BadillaDepartment of Biological Sciences, Columbia University , 1212 Amsterdam Avenue, New York, New York 10027, United States.
Jessica Valle-OreroDepartment of Biological Sciences, Columbia University , 1212 Amsterdam Avenue, New York, New York 10027, United States.
Julio M FernándezDepartment of Biological Sciences, Columbia University , 1212 Amsterdam Avenue, New York, New York 10027, United States.

Funding

Single Molecule Studies of Titin ElasticityR01HL061228 · NHLBI · MAYO CLINIC COLL OF MEDICINE, ROCHESTER · PI FERNANDEZ, JULIO M · 1999 to 2017
$7.4M
Nanomechanics of bacterial adhesionR01GM116122 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI FERNANDEZ, JULIO M · 2015 to 2018
$1.4M
NHLBI NIH HHS R01 HL061228NIGMS NIH HHS R01 GM116122
6 · The paper itself

Abstract

Under physiological conditions, protein oxidation and misfolding occur with very low probability and on long times scales. Single-molecule techniques provide the ability to distinguish between properly folded and damaged proteins that are otherwise masked in ensemble measurements. However, at physiological conditions these rare events occur with a time constant of several hours, inaccessible to current single-molecule approaches. Here we present a magnetic-tweezers-based technique that allows, for the first time, the study of folding of single proteins during week-long experiments. This technique combines HaloTag anchoring, sub-micrometer positioning of magnets, and an active correction of the focal drift. Using this technique and protein L as a molecular template, we generate a magnet law by correlating the distance between the magnet and the measuring paramagnetic bead with unfolding/folding steps. We demonstrate that, using this magnet law, we can accurately measure the dynamics of proteins over a wide range of forces, with minimal dispersion from bead to bead. We also show that the force calibration remains invariant over week-long experiments applied to the same single proteins. The approach demonstrated in this Article opens new, exciting ways to examine proteins on the "human" time scale and establishes magnetic tweezers as a valuable technique to study low-probability events that occur during protein folding under force.

Indexed as

MagnetsBacterial ProteinsMechanical PhenomenaProtein FoldingBacterial Proteins

Identifiers

PMID27409974
PMCPMC5510598

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.