Evidence map›Paper›PMID 27408815›Full record

ArticleGenomics data2016

Transcriptome profiling of TDC cluster deletion mutant of Enterococcus faecalis V583.

Marta Perez, Victor Ladero, Beatriz Del Rio, Begoña Redruello, Anne de Jong, Oscar P Kuipers, Jan Kok, M Cruz Martin, Maria Fernandez, Miguel A Alvarez

Open access · goldAbstract read
In one paragraph

Article in Genomics data, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Probiotics and the Treatment of Parkinson's Disease: An Update.Cellular and molecular neurobiology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Marta PerezInstituto de Productos Lácteos de Asturias, IPLA-CSIC, Paseo Rio Linares s/n, 33300, Villaviciosa, Spain.
Victor LaderoInstituto de Productos Lácteos de Asturias, IPLA-CSIC, Paseo Rio Linares s/n, 33300, Villaviciosa, Spain.
Beatriz Del RioInstituto de Productos Lácteos de Asturias, IPLA-CSIC, Paseo Rio Linares s/n, 33300, Villaviciosa, Spain.
Begoña RedruelloInstituto de Productos Lácteos de Asturias, IPLA-CSIC, Paseo Rio Linares s/n, 33300, Villaviciosa, Spain.
Anne de JongDepartment of Molecular Genetics, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands.
Oscar P KuipersDepartment of Molecular Genetics, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands.
Jan KokDepartment of Molecular Genetics, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands.
M Cruz MartinInstituto de Productos Lácteos de Asturias, IPLA-CSIC, Paseo Rio Linares s/n, 33300, Villaviciosa, Spain.
Maria FernandezInstituto de Productos Lácteos de Asturias, IPLA-CSIC, Paseo Rio Linares s/n, 33300, Villaviciosa, Spain.
Miguel A AlvarezInstituto de Productos Lácteos de Asturias, IPLA-CSIC, Paseo Rio Linares s/n, 33300, Villaviciosa, Spain.
Instituto de Productos Lácteos de Asturias · ESUniversity of Groningen · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The species Enterococcus faecalis is able to catabolise the amino acid tyrosine into the biogenic amine tyramine by the tyrosine decarboxilase (TDC) pathway Ladero et al. (2012) [1]. The TDC cluster comprises four genes: tyrS, an aminoacyl-tRNA synthetase-like gene; tdcA, which encodes the tyrosine decarboxylase; tyrP, a tyrosine/tyramine exchanger gene and nhaC-2, which encodes an Na(+)/H(+) antiporter and whose role in the tyramine biosynthesis remains unknown [2]. In E. faecalis V583 the last three genes are co-transcribed as a single polycistronic mRNA forming the catabolic operon, while tyrS is transcribed independently of the catabolic genes as a monocistronic mRNA [2]. The catabolic operon is transcriptionally induced by tyrosine and acidic pH. On the opposite, the tyrS expression is repressed by tyrosine concentrations [2]. In this work we report the transcriptional profiling of the TDC cluster deletion mutant (E. faecalis V583 ΔTDC) [2] compared to the wild-type strain, both grown in M17 medium supplemented with tyrosine. The transcriptional profile data of TDC cluster-regulated genes were deposited in the Gene Expression Omnibus (GEO) database under accession no. GSE77864.

Indexed as

Biogenic aminesEnterococcus faecalisMicroarrayTyramineTyrosine decarboxylase cluster

Identifiers

PMID27408815
PMCPMC4932888
OpenAlexW2470481033

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.