Evidence map›Paper›PMID 27408681›Full record

ArticleStandards in genomic sciences2015

Permanent draft genome sequence of sulfoquinovose-degrading Pseudomonas putida strain SQ1.

Ann-Katrin Felux, Paolo Franchini, David Schleheck

Abstract read
In one paragraph

Article in Standards in genomic sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Entner-Doudoroff pathway for sulfoquinovose degradation in Pseudomonas putida SQ1.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Ann-Katrin FeluxDepartment of Biology, University of Konstanz, Konstanz, Germany ; Konstanz Research School Chemical Biology, University of Konstanz, Konstanz, Germany.
Paolo FranchiniDepartment of Biology, University of Konstanz, Konstanz, Germany ; Genomics Center Konstanz, University of Konstanz, Konstanz, Germany.
David SchleheckDepartment of Biology, University of Konstanz, Konstanz, Germany ; Konstanz Research School Chemical Biology, University of Konstanz, Konstanz, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pseudomonas putida SQ1 was isolated for its ability to utilize the plant sugar sulfoquinovose (6-deoxy-6-sulfoglucose) for growth, in order to define its SQ-degradation pathway and the enzymes and genes involved. Here we describe the features of the organism, together with its draft genome sequence and annotation. The draft genome comprises 5,328,888 bp and is predicted to encode 5,824 protein-coding genes; the overall G + C content is 61.58 %. The genome annotation is being used for identification of proteins that might be involved in SQ degradation by peptide fingerprinting-mass spectrometry.

Indexed as

aerobicGram-negativeorganosulfonateplant sulfolipidPseudomonadaceaePseudomonas putida SQ1sulfoquinovose biodegradation

Identifiers

PMID27408681
PMCPMC4940961

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.