Evidence map›Paper›PMID 27407301›Full record

ArticleIndian journal of microbiology2016

Proteomic Investigation of Photorhabdus Bacteria for Nematode-Host Specificity.

Ram Kumar, Jyoti Kushwah, Sudershan Ganguly, Veena Garg, Vishal S Somvanshi

Open access · hybridAbstract read
In one paragraph

Article in Indian journal of microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.2field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Molecular Regulators of Entomopathogenic Nematode-Bacterial Symbiosis.Results and problems in cell differentiation · 2020
    Review
  4. Discovery of a Highly Virulent Strain ofIndian journal of microbiology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Ram Kumar *Division of Nematology, ICAR- Indian Agricultural Research Institute, Pusa Campus, New Delhi, 110012 India.
Jyoti Kushwah *Division of Nematology, ICAR- Indian Agricultural Research Institute, Pusa Campus, New Delhi, 110012 India.
Sudershan Ganguly *Division of Nematology, ICAR- Indian Agricultural Research Institute, Pusa Campus, New Delhi, 110012 India.
Veena GargDepartment of Biotechnology and Biosciences, Banasthali Vidyapeeth, Jaipur, Rajasthan India.
Vishal S SomvanshiDivision of Nematology, ICAR- Indian Agricultural Research Institute, Pusa Campus, New Delhi, 110012 India.
Indian Agricultural Research Institute · INBanasthali University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Majority of animals form symbiotic relationships with bacteria. Based on the number of bacterial species associating with an animal, these symbiotic associations can be mono-specific, relatively simple (2-25 bacterial species/animal) or highly complex (>10(2)-10(3) bacterial species/animal). Photorhabdus (family-Enterobacteriaceae) forms a mono-specific symbiotic relationship with the entomopathogenic nematode Heterorhabditis. This system provides a tractable genetic model for animal-microbe symbiosis studies. Here, we investigated the bacterial factors that may be responsible for governing host specificity between nematode and their symbiont bacteria using proteomics approach. Total protein profiles of P. luminescens ssp. laumondii (host nematode- H. bacteriophora) and P. luminescens ssp. akhurstii (host nematode- H. indica) were compared using 2-D gel electrophoresis, followed by identification of differentially expressed proteins by MALDI-TOF MS. Thirty-nine unique protein spots were identified - 24 from P. luminescens ssp. laumondii and 15 from P. luminescens ssp. akhurstii. These included proteins that might be involved in determining host specificity directly (for e.g. pilin FimA, outer membrane protein A), indirectly through effect on bacterial secondary metabolism (for e.g. malate dehydrogenase Mdh, Pyruvate formate-lyase PflA, flavo protein WrbA), or in a yet unknown manner (for e.g. hypothetical proteins, transcription regulators). Further functional validation is needed to establish the role of these bacterial proteins in nematode-host specificity.

Indexed as

2-D gel electrophoresisHeterorhabditisHost specificityPhotorhabdusProteomicsSymbiosis

Identifiers

PMID27407301
PMCPMC4920770
OpenAlexW2468392073

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.