Evidence map›Paper›PMID 27405804›Full record

ArticleGenome research2016

Novel features of telomere biology revealed by the absence of telomeric DNA methylation.

Alejandro Vega-Vaquero, Giancarlo Bonora, Marco Morselli, María I Vaquero-Sedas, Liudmilla Rubbi, Matteo Pellegrini, Miguel A Vega-Palas

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
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  13. Epigenetic features of human telomeres.Nucleic acids research · 2018
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Alejandro Vega-VaqueroTechnical Superior School of Informatics Engineering, University of Seville, 41080 Seville, Spain;
Giancarlo BonoraDepartment of Molecular, Cell and Developmental Biology, University of California, Los Angeles, California 90095, USA;
Marco MorselliDepartment of Molecular, Cell and Developmental Biology, University of California, Los Angeles, California 90095, USA;
María I Vaquero-SedasInstitute of Vegetal Biochemistry and Photosynthesis, CSIC-University of Seville, IBVF (CSIC-US), 41092 Seville, Spain.
Liudmilla RubbiDepartment of Molecular, Cell and Developmental Biology, University of California, Los Angeles, California 90095, USA;
Matteo PellegriniDepartment of Molecular, Cell and Developmental Biology, University of California, Los Angeles, California 90095, USA;
Miguel A Vega-PalasInstitute of Vegetal Biochemistry and Photosynthesis, CSIC-University of Seville, IBVF (CSIC-US), 41092 Seville, Spain.
University of California, Los Angeles · USInstituto de Bioquímica Vegetal y Fotosíntesis · ESUniversidad de Sevilla · ES

Funding

Women's CancersP30CA016042 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Samuel Wheeler French · 1985 to 2026
$134.5M
NCI NIH HHS P30 CA016042
6 · The paper itself

Abstract

Cytosine methylation regulates the length and stability of telomeres, which can affect a wide variety of biological features, including cell differentiation, development, or illness. Although it is well established that subtelomeric regions are methylated, the presence of methylated cytosines at telomeres has remained controversial. Here, we have analyzed multiple bisulfite sequencing studies to address the methylation status of Arabidopsis thaliana telomeres. We found that the levels of estimated telomeric DNA methylation varied among studies. Interestingly, we estimated higher levels of telomeric DNA methylation in studies that produced C-rich telomeric strands with lower efficiency. However, these high methylation estimates arose due to experimental limitations of the bisulfite technique. We found a similar phenomenon for mitochondrial DNA: The levels of mitochondrial DNA methylation detected were higher in experiments with lower mitochondrial read production efficiencies. Based on experiments with high telomeric C-rich strand production efficiencies, we concluded that Arabidopsis telomeres are not methylated, which was confirmed by methylation-dependent restriction enzyme analyses. Thus, our studies indicate that telomeres are refractory to de novo DNA methylation by the RNA-directed DNA methylation machinery. This result, together with previously reported data, reveals that subtelomeric DNA methylation controls the homeostasis of telomere length.

Indexed as

ArabidopsisCytosineDNA MethylationDNA, MitochondrialRNATelomereTelomere HomeostasisCytosineDNA, MitochondrialRNA

Identifiers

PMID27405804
PMCPMC4971770
OpenAlexW2460453616

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.