Evidence map›Paper›PMID 27405473›Full record

ArticleBMC plant biology2016

Distinct expression and function of carotenoid metabolic genes and homoeologs in developing wheat grains.

Xiaoqiong Qin, Kathryn Fischer, Shu Yu, Jorge Dubcovsky, Li Tian

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 36 citations in OpenAlex.

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  7. Genetic dissection of lutein content in common wheat via association and linkage mapping.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
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  17. Assessing the Role ofFrontiers in nutrition · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 2 countries.

Xiaoqiong QinDepartment of Plant Sciences, Mail Stop 3, University of California, Davis, CA, 95616, USA.
Kathryn FischerDepartment of Plant Sciences, Mail Stop 3, University of California, Davis, CA, 95616, USA.
Shu YuDepartment of Plant Sciences, Mail Stop 3, University of California, Davis, CA, 95616, USA.
Jorge DubcovskyDepartment of Plant Sciences, Mail Stop 3, University of California, Davis, CA, 95616, USA.
Li TianDepartment of Plant Sciences, Mail Stop 3, University of California, Davis, CA, 95616, USA. ltian@ucdavis.edu.ORCID 0000-0001-6461-6072
University of California, Davis · USHoward Hughes Medical Institute · USUniversity of California, Merced · USUniversity of California System · US

Funding

Howard Hughes Medical Institute
6 · The paper itself

Abstract

backgroundβ-carotene, the most active provitamin A molecule produced by plants, plays important roles in human nutrition and health. β-carotene does not usually accumulate in the endosperm (i.e. flour) of mature wheat grains, which is a major food source of calories for humans. Therefore, enriching β-carotene accumulation in wheat grain endosperm will enable a sustainable dietary supplementation of provitamin A. Several metabolic genes affecting β-carotene accumulation have already been isolated from wheat, including phytoene synthase 1 (PSY1), lycopene ε-cyclase (LCYe) and carotenoid β-ring hydroxylase1/2 (HYD1/2).

resultsIn this work, we cloned and biochemically characterized two carotenoid cleavage dioxygenases (CCDs), CCD1 and CCD4, from wheat. While CCD1 homoeologs cleaved β-apo-8'-carotenal, β-carotene, lutein and zeaxanthin into apocarotenoid products, CCD4 homoeologs were inactive towards these substrates in in vitro assays. When analyzed by real-time qPCR, PSY1, LCYe, HYD1/2 and CCD1/4 homoeologs showed distinct expression patterns in vegetative tissues and sections of developing tetraploid and hexaploid wheat grains, suggesting that carotenoid metabolic genes and homoeologs are differentially regulated at the transcriptional level in wheat.

conclusionsThe CCD1/4 enzyme activity and the spatial-temporal gene expression data provide critical insights into the specific carotenoid metabolic gene homoeologs that control β-carotene accumulation in wheat grain endosperm, thus establishing the knowledge base for generation of wheat varieties with enhanced β-carotene in the endosperm through breeding and genome editing approaches.

Indexed as

CarotenoidsDioxygenasesGene Expression Regulation, PlantGeranylgeranyl-Diphosphate GeranylgeranyltransferaseIntramolecular LyasesPlant ProteinsSeedsTriticumCarotenoidsDioxygenasesGeranylgeranyl-Diphosphate GeranylgeranyltransferaseIntramolecular Lyaseslycopene cyclase-isomerasePlant ProteinsCarotenoidCarotenoid cleavage dioxygenaseEndospermGrainProvitamin ASpatial expressionWheatβ-carotene

Identifiers

PMID27405473
PMCPMC4943016
OpenAlexW2473250340

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.