Evidence map›Paper›PMID 27404435›Full record

ArticleScientific reports2016

Reversible thermal unfolding of a yfdX protein with chaperone-like activity.

Paramita Saha, Camelia Manna, Jaydeb Chakrabarti, Mahua Ghosh

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Crystal structure and biochemical analysis suggest that YjoB ATPase is a putative substrate-specific molecular chaperone.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  4. Article
  5. Article
  6. Article
  7. PV1 Protein fromInternational journal of molecular sciences · 2020
    Article
  8. Article
  9. Article
  10. Article
  11. Structural and Physiological Exploration ofFrontiers in microbiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Paramita SahaDepartment of Chemical, Biological And Macromolecular Sciences, S. N. Bose National Centre for Basic Sciences, Block JD, Sector III, Salt lake, Kolkata 700106, India.
Camelia MannaDepartment of Chemical, Biological And Macromolecular Sciences, S. N. Bose National Centre for Basic Sciences, Block JD, Sector III, Salt lake, Kolkata 700106, India.
Jaydeb ChakrabartiDepartment of Chemical, Biological And Macromolecular Sciences, S. N. Bose National Centre for Basic Sciences, Block JD, Sector III, Salt lake, Kolkata 700106, India.
Mahua GhoshDepartment of Chemical, Biological And Macromolecular Sciences, S. N. Bose National Centre for Basic Sciences, Block JD, Sector III, Salt lake, Kolkata 700106, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

yfdX proteins are ubiquitously present in a large number of virulent bacteria. A member of this family of protein in E. coli is known to be up-regulated by the multidrug response regulator. Their abundance in such bacteria suggests some important yet unidentified functional role of this protein. Here, we study the thermal response and stability of yfdX protein STY3178 from Salmonella Typhi using circular dichroism, steady state fluorescence, dynamic light scattering and nuclear magnetic resonance experiments. We observe the protein to be stable up to a temperature of 45 °C. It folds back to the native conformation from unfolded state at temperature as high as 80 °C. The kinetic measurements of unfolding and refolding show Arrhenius behavior where the refolding involves less activation energy barrier than that of unfolding. We propose a homology model to understand the stability of the protein. Our molecular dynamic simulation studies on this model structure at high temperature show that the structure of this protein is quite stable. Finally, we report a possible functional role of this protein as a chaperone, capable of preventing DTT induced aggregation of insulin. Our studies will have broader implication in understanding the role of yfdX proteins in bacterial function and virulence.

Indexed as

Bacterial ProteinsCircular DichroismDynamic Light ScatteringMagnetic Resonance SpectroscopyModels, MolecularMolecular Dynamics SimulationOptical ImagingProtein ConformationProtein FoldingProtein StabilitySalmonella typhiTemperatureBacterial Proteins

Identifiers

PMID27404435
PMCPMC4941729

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.