Evidence map›Paper›PMID 27404346›Full record

ArticleScientific reports2016

A consolidated analysis of the physiologic and molecular responses induced under acid stress in the legume-symbiont model-soil bacterium Sinorhizobium meliloti.

W O Draghi, M F Del Papa, C Hellweg, S A Watt, T F Watt, A Barsch, M J Lozano, A Lagares, M E Salas, J L López and 10 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
7.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 38 citations in OpenAlex.

  1. Pooled it
  2. Transcriptomic Response ofInternational journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 5 institutions in 2 countries.

W O DraghiIBBM - Instituto de Biotecnología y Biología Molecular, CONICET - Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, calles 47 y 115, 1900-La Plata, Argentina.
M F Del PapaIBBM - Instituto de Biotecnología y Biología Molecular, CONICET - Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, calles 47 y 115, 1900-La Plata, Argentina.
C HellwegCeBiTec - Centrum für Biotechnologie, Universität Bielefeld, Bielefeld, Germany.
S A WattCeBiTec - Centrum für Biotechnologie, Universität Bielefeld, Bielefeld, Germany.
T F WattCeBiTec - Centrum für Biotechnologie, Universität Bielefeld, Bielefeld, Germany.
A BarschCeBiTec - Centrum für Biotechnologie, Universität Bielefeld, Bielefeld, Germany.
M J LozanoIBBM - Instituto de Biotecnología y Biología Molecular, CONICET - Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, calles 47 y 115, 1900-La Plata, Argentina.
A LagaresLaboratorio de Bioquímica, Microbiología e Interacciones Biológicas en el Suelo, Departamento de Ciencia y Tecnología, Universidad Nacional de Quilmes, Roque Sáenz Peña 352, Bernal B1876BXD, Buenos Aires, Argentina.
M E SalasIBBM - Instituto de Biotecnología y Biología Molecular, CONICET - Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, calles 47 y 115, 1900-La Plata, Argentina.
J L LópezIBBM - Instituto de Biotecnología y Biología Molecular, CONICET - Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, calles 47 y 115, 1900-La Plata, Argentina.
F J AlbicoroIBBM - Instituto de Biotecnología y Biología Molecular, CONICET - Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, calles 47 y 115, 1900-La Plata, Argentina.
J F NilssonIBBM - Instituto de Biotecnología y Biología Molecular, CONICET - Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, calles 47 y 115, 1900-La Plata, Argentina.
G A Torres TejerizoIBBM - Instituto de Biotecnología y Biología Molecular, CONICET - Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, calles 47 y 115, 1900-La Plata, Argentina.
M F LunaCINDEFI - Centro de Investigación y Desarrollo en Fermentaciones Industriales, CONICET - Departamento de Química, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, calles 47 y 115, 1900-La Plata, Argentina.
M PistorioIBBM - Instituto de Biotecnología y Biología Molecular, CONICET - Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, calles 47 y 115, 1900-La Plata, Argentina.
J L BoiardiCINDEFI - Centro de Investigación y Desarrollo en Fermentaciones Industriales, CONICET - Departamento de Química, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, calles 47 y 115, 1900-La Plata, Argentina.
A PühlerCeBiTec - Centrum für Biotechnologie, Universität Bielefeld, Bielefeld, Germany.
S WeidnerCeBiTec - Centrum für Biotechnologie, Universität Bielefeld, Bielefeld, Germany.
K NiehausCeBiTec - Centrum für Biotechnologie, Universität Bielefeld, Bielefeld, Germany.
A LagaresIBBM - Instituto de Biotecnología y Biología Molecular, CONICET - Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, calles 47 y 115, 1900-La Plata, Argentina.
Bielefeld University · DEConsejo Nacional de Investigaciones Científicas y Técnicas · ARInstituto de Biotecnología y Biología Molecular · ARUniversidad Nacional de La Plata · ARNational University of Quilmes · AR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Abiotic stresses in general and extracellular acidity in particular disturb and limit nitrogen-fixing symbioses between rhizobia and their host legumes. Except for valuable molecular-biological studies on different rhizobia, no consolidated models have been formulated to describe the central physiologic changes that occur in acid-stressed bacteria. We present here an integrated analysis entailing the main cultural, metabolic, and molecular responses of the model bacterium Sinorhizobium meliloti growing under controlled acid stress in a chemostat. A stepwise extracellular acidification of the culture medium had indicated that S. meliloti stopped growing at ca. pH 6.0-6.1. Under such stress the rhizobia increased the O2 consumption per cell by more than 5-fold. This phenotype, together with an increase in the transcripts for several membrane cytochromes, entails a higher aerobic-respiration rate in the acid-stressed rhizobia. Multivariate analysis of global metabolome data served to unequivocally correlate specific-metabolite profiles with the extracellular pH, showing that at low pH the pentose-phosphate pathway exhibited increases in several transcripts, enzymes, and metabolites. Further analyses should be focused on the time course of the observed changes, its associated intracellular signaling, and on the comparison with the changes that operate during the sub lethal acid-adaptive response (ATR) in rhizobia.

Indexed as

Hydrogen-Ion ConcentrationAcidsCytochromesFabaceaeNitrogen FixationOxygen ConsumptionPentose Phosphate PathwayRhizobiumSinorhizobium melilotiSoilStress, PhysiologicalSymbiosisAcidsCytochromesSoil

Identifiers

PMID27404346
PMCPMC4941405
OpenAlexW2470503258

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.