Evidence map›Paper›PMID 27404344›Full record

ArticleDevelopmental dynamics : an official publication of the American Association of Anatomists2016

Ablation of the epithelial-specific splicing factor Esrp1 results in ureteric branching defects and reduced nephron number.

Thomas W Bebee, Sunder Sims-Lucas, Juw Won Park, Daniel Bushnell, Benjamin Cieply, Yi Xing, Carlton M Bates, Russ P Carstens

Open access · hybridAbstract read
In one paragraph

Article in Developmental dynamics : an official publication of the American Association of Anatomists, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

  1. MRAS: Master Regulator Analysis of Alternative Splicing.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
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  9. AnDevelopment (Cambridge, England) · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Thomas W BebeeDepartment of Medicine (Renal Division), Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania.
Sunder Sims-LucasDivision of Nephrology, Department of Pediatrics, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania.
Juw Won ParkDepartment of Computer Engineering and Computer Science, KBRIN Bioinformatics Core, University of Louisville, Louisville, Kentucky.
Daniel BushnellDivision of Nephrology, Department of Pediatrics, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania.
Benjamin CieplyDepartment of Medicine (Renal Division), Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania.
Yi XingDepartment of Microbiology, Immunology and Molecular Genetics, University of California Los Angeles, Los Angeles, California.
Carlton M BatesDivision of Nephrology, Department of Pediatrics, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania. russcars@upenn.edu.
Russ P CarstensDepartment of Medicine (Renal Division), Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania. batescm@upmc.edu.
University of Pennsylvania · USUniversity of Pittsburgh · USChildren's Hospital of Pittsburgh · USUniversity of California, Los Angeles · USUniversity of Louisville · US

Funding

Single Nephron and MetabolomicsP30DK079307 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KLEYMAN, THOMAS R · 2008 to 2022
$13.4M
Functions of Epithelial Splicing Regulatory Proteins and their role in the EMTR01GM088809 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI CARSTENS, RUSS PAUL · 2009 to 2013
$1.5M
Role of Receptors in the Metanephric MesenchymeR01DK095748 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BATES, CARLTON MATTHEW · 2013 to 2016
$1.4M
Renal Stroma Derived Endothelial Precursors are Critical for Renal DevelopmentK01DK096996 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SIMS-LUCAS, SUNDER · 2013 to 2017
$557k
Global programs of ESRP-regulated splicing in renal development and functionR56DK097257 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI CARSTENS, RUSS PAUL · 2012 to 2012
$150k
ESRP regulated alternative splicing in EMT/MET and kidney developmentF32DK098917 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI BEBEE, THOMAS W · 2013 to 2014
$102k
NIDDK NIH HHS F32 DK098917NIDDK NIH HHS K01 DK096996NIDDK NIH HHS P30 DK079307NIDDK NIH HHS R01 DK095748NIDDK NIH HHS R56 DK097257NIGMS NIH HHS R01 GM088809
6 · The paper itself

Abstract

backgroundAbnormalities in ureteric bud (UB) branching morphogenesis lead to congenital anomalies of the kidney and reduced nephron numbers associated with chronic kidney disease (CKD) and hypertension. Previous studies showed that the epithelial fibroblast growth factor receptor 2 (Fgfr2) IIIb splice variant supports ureteric morphogenesis in response to ligands from the metanephric mesenchyme during renal organogenesis. The epithelial-specific splicing regulator Esrp1 is required for expression of Fgfr2-IIIb and other epithelial-specific splice variants. Our objective was to determine whether Esrp1 is required for normal kidney development.

resultsAblation of Esrp1 in mice, alone or together with its paralog Esrp2, was associated with reduced kidney size and increased incidence of renal aplasia. Three-dimensional imaging showed that embryonic Esrp1 knockout (KO) kidneys had fewer ureteric tips and reduced nephron numbers. Analysis of alternative splicing in Esrp-null ureteric epithelial cells by RNA-Seq confirmed a splicing switch in Fgfr2 as well as numerous other transcripts.

conclusionsOur findings reveal that Esrp1-regulated splicing in ureteric epithelial cells plays an important role in renal development. Defects in Esrp1 KO kidneys likely reflect reduced and/or absent ureteric branching, leading to decreased nephron induction secondary to incorrect Fgfr2 splicing and other splicing alterations. Developmental Dynamics 245:991-1000, 2016. © 2016 The Authors. Developmental Dynamics published by Wiley Periodicals, Inc. on behalf of American Association of Anatomists.

Indexed as

AnimalsEpithelial CellsFemaleKidneyMaleMiceMice, KnockoutNephronsReal-Time Polymerase Chain ReactionReverse Transcriptase Polymerase Chain ReactionRNA-Binding ProteinsRNA SplicingSignal TransductionUreterESRP1 protein, mouseESRP2 protein, mouseRNA-Binding Proteinsalternative splicingepithelial splicing regulatory proteinsfibroblast growth factor receptorskidney development

Identifiers

PMID27404344
PMCPMC5096029
OpenAlexW2496000905

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.