Evidence map›Paper›PMID 27402763›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

p53-Dependent DNA damage response sensitive to editing-defective tRNA synthetase in zebrafish.

Youngzee Song, Yi Shi, Tristan M Carland, Shanshan Lian, Tomoyuki Sasaki, Nicholas J Schork, Steven R Head, Shuji Kishi, Paul Schimmel

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.5field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Mammalian mitochondrial translation infidelity leads to oxidative stress-induced cell cycle arrest and cardiomyopathy.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  6. High expression of VARS promotes the growth of multiple myeloma cells by causing imbalance in valine metabolism.Zhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2023
    Article
  7. Review
  8. Biallelic variants in KARS1 are associated with neurodevelopmental disorders and hearing loss recapitulated by the knockout zebrafish.Genetics in medicine : official journal of the American College of Medical Genetics · 2021
    Article
  9. Article
  10. Article
  11. Rewiring protein synthesis: From natural to synthetic amino acids.Biochimica et biophysica acta. General subjects · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Youngzee SongThe Scripps Laboratories for tRNA Synthetase Research, The Scripps Research Institute, La Jolla, CA 92037; Department of Cell and Molecular Biology, The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037; Department of Chemistry, The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037;
Yi ShiThe Scripps Laboratories for tRNA Synthetase Research, The Scripps Research Institute, La Jolla, CA 92037; Department of Cell and Molecular Biology, The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037; Department of Chemistry, The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037;
Tristan M CarlandThe Scripps Translational Science Institute, The Scripps Research Institute, La Jolla, CA 92037; Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA 92037; Department of Human Biology, The J. Craig Venter Institute, La Jolla, CA 92037;
Shanshan LianDepartment of Metabolism and Aging, The Scripps Research Institute, Jupiter, FL 33458;
Tomoyuki SasakiDepartment of Metabolism and Aging, The Scripps Research Institute, Jupiter, FL 33458;
Nicholas J SchorkThe Scripps Translational Science Institute, The Scripps Research Institute, La Jolla, CA 92037; Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA 92037; Department of Human Biology, The J. Craig Venter Institute, La Jolla, CA 92037;
Steven R HeadNext Generation Sequencing and Microarray Core Facility, The Scripps Research Institute, La Jolla, CA 92037.
Shuji KishiDepartment of Metabolism and Aging, The Scripps Research Institute, Jupiter, FL 33458; kishi@scripps.edu schimmel@scripps.edu.
Paul SchimmelThe Scripps Laboratories for tRNA Synthetase Research, The Scripps Research Institute, La Jolla, CA 92037; Department of Cell and Molecular Biology, The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037; Department of Chemistry, The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037; Department of Metabolism and Aging, The Scripps Research Institute, Jupiter, FL 33458; kishi@scripps.edu schimmel@scripps.edu.
Scripps Research Institute · USScripps Laboratories (United States) · US

Funding

Neurpsychopharmacology-Multidisciplinary TrainingT32AA007456 · NIAAA · SCRIPPS RESEARCH INSTITUTE, THE · PI MARISA ROBERTO · 1985 to 2026
$13.4M
Alcohol Research in the Science/Practitioner ModelT32AA013525 · NIAAA · SAN DIEGO STATE UNIVERSITY · PI EDWARD P RILEY, ANDREA SPADONI TOWNSEND · 2002 to 2026
$8.4M
Components of Translation in Signal TransductionR01CA092577 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI SCHIMMEL, PAUL R · 2001 to 2016
$4.5M
NCI NIH HHS R01 CA092577NIAAA NIH HHS T32 AA007456NIAAA NIH HHS T32 AA013525
6 · The paper itself

Abstract

Brain and heart pathologies are caused by editing defects of transfer RNA (tRNA) synthetases, which preserve genetic code fidelity by removing incorrect amino acids misattached to tRNAs. To extend understanding of the broader impact of synthetase editing reactions on organismal homeostasis, and based on effects in bacteria ostensibly from small amounts of mistranslation of components of the replication apparatus, we investigated the sensitivity to editing of the vertebrate genome. We show here that in zebrafish embryos, transient overexpression of editing-defective valyl-tRNA synthetase (ValRS(ED)) activated DNA break-responsive H2AX and p53-responsive downstream proteins, such as cyclin-dependent kinase (CDK) inhibitor p21, which promotes cell-cycle arrest at DNA damage checkpoints, and Gadd45 and p53R2, with pivotal roles in DNA repair. In contrast, the response of these proteins to expression of ValRS(ED) was abolished in p53-deficient fish. The p53-activated downstream signaling events correlated with suppression of abnormal morphological changes caused by the editing defect and, in adults, reversed a shortened life span (followed for 2 y). Conversely, with normal editing activities, p53-deficient fish have a normal life span and few morphological changes. Whole-fish deep sequencing showed genomic mutations associated with the editing defect. We suggest that the sensitivity of p53 to expression of an editing-defective tRNA synthetase has a critical role in promoting genome integrity and organismal homeostasis.

Indexed as

DNA DamageAmino Acyl-tRNA SynthetasesAnimalsEmbryo, NonmammalianFemaleGene Expression Regulation, DevelopmentalMaleMutationRNA EditingTumor Suppressor Protein p53ZebrafishZebrafish ProteinsAmino Acyl-tRNA SynthetasesTumor Suppressor Protein p53Zebrafish Proteinsgenomic fidelitygenomic mutationsmistranslationmorphological changesshortened lifespan

Identifiers

PMID27402763
PMCPMC4968768
OpenAlexW2464065364

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.