Evidence map›Paper›PMID 27402627›Full record

ArticleJournal of bacteriology2016

Spermidine Inversely Influences Surface Interactions and Planktonic Growth in Agrobacterium tumefaciens.

Yi Wang, Sok Ho Kim, Ramya Natarajan, Jason E Heindl, Eric L Bruger, Christopher M Waters, Anthony J Michael, Clay Fuqua

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Polyamine function in archaea and bacteria.The Journal of biological chemistry · 2018
    Review
  10. Article
  11. Spermidine promotesThe Journal of biological chemistry · 2017
    Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Yi WangDepartment of Biology, Indiana University, Bloomington, Indiana, USA.
Sok Ho KimDepartment of Pharmacology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Ramya NatarajanDepartment of Biology, Indiana University, Bloomington, Indiana, USA.
Jason E HeindlDepartment of Biology, Indiana University, Bloomington, Indiana, USA.ORCID 0000-0003-3919-8045
Eric L BrugerDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, USA.
Christopher M WatersDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, USA.
Anthony J MichaelDepartment of Pharmacology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Clay FuquaDepartment of Biology, Indiana University, Bloomington, Indiana, USA cfuqua@indiana.edu.ORCID 0000-0001-7051-1760
Indiana University Bloomington · USMichigan State University · USThe University of Texas Southwestern Medical Center · US

Funding

From structure to systems: Understanding cyclic di-GMP control of transcriptionR01GM109259 · NIGMS · MICHIGAN STATE UNIVERSITY · PI WATERS, CHRISTOPHER M · 2015 to 2019
$2.0M
Synthesis and function of a unipolar expolysaccharide in AgrobacteriumR01GM080546 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI FUQUA, WILLIAM C · 2007 to 2011
$1.3M
Developmental Asymmetry in Agrobacterium tumefaciensF32GM100601 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI HEINDL, JASON EUGENE · 2012 to 2014
$135k
NIGMS NIH HHS F32 GM100601NIGMS NIH HHS R01 GM080546NIGMS NIH HHS R01 GM109259
6 · The paper itself

Abstract

unlabelledIn bacteria, the functions of polyamines, small linear polycations, are poorly defined, but these metabolites can influence biofilm formation in several systems. Transposon insertions in an ornithine decarboxylase (odc) gene in Agrobacterium tumefaciens, predicted to direct synthesis of the polyamine putrescine from ornithine, resulted in elevated cellulose. Null mutants for odc grew somewhat slowly in a polyamine-free medium but exhibited increased biofilm formation that was dependent on cellulose production. Spermidine is an essential metabolite in A. tumefaciens and is synthesized from putrescine in A. tumefaciens via the stepwise actions of carboxyspermidine dehydrogenase (CASDH) and carboxyspermidine decarboxylase (CASDC). Exogenous addition of either putrescine or spermidine to the odc mutant returned biofilm formation to wild-type levels. Low levels of exogenous spermidine restored growth to CASDH and CASDC mutants, facilitating weak biofilm formation, but this was dampened with increasing concentrations. Norspermidine rescued growth for the odc, CASDH, and CASDC mutants but did not significantly affect their biofilm phenotypes, whereas in the wild type, it stimulated biofilm formation and depressed spermidine levels. The odc mutant produced elevated levels of cyclic diguanylate monophosphate (c-di-GMP), exogenous polyamines modulated these levels, and expression of a c-di-GMP phosphodiesterase reversed the enhanced biofilm formation. Prior work revealed accumulation of the precursors putrescine and carboxyspermidine in the CASDH and CASDC mutants, respectively, but unexpectedly, both mutants accumulated homospermidine; here, we show that this requires a homospermidine synthase (hss) homologue. IMPORTANCE: Polyamines are small, positively charged metabolites that are nearly ubiquitous in cellular life. They are often essential in eukaryotes and more variably in bacteria. Polyamines have been reported to influence the surface-attached biofilm formation of several bacteria. In Agrobacterium tumefaciens, mutants with diminished levels of the polyamine spermidine are stimulated for biofilm formation, and exogenous provision of spermidine decreases biofilm formation. Spermidine is also essential for A. tumefaciens growth, but the related polyamine norspermidine exogenously rescues growth and does not diminish biofilm formation, revealing that the growth requirement and biofilm control are separable. Polyamine control of biofilm formation appears to function via effects on the cellular second messenger cyclic diguanylate monophosphate, regulating the transition from a free-living to a surface-attached lifestyle.

Indexed as

Agrobacterium tumefaciensBacterial ProteinsBiofilmsCelluloseGene Expression Regulation, BacterialMutationPolyaminesPutrescineSpermidineBacterial ProteinsCellulosenorspermidinePolyaminesPutrescineSpermidine

Identifiers

PMID27402627
PMCPMC5019071
OpenAlexW2469102085

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.