Evidence map›Paper›PMID 27402461›Full record

ArticleInternational journal of biological macromolecules2016

A parallel panning scheme used for selection of a GluA4-specific Fab targeting the ligand-binding domain.

Rasmus P Clausen, Andreas Ø Mohr, Erik Riise, Anders A Jensen, Avinash Gill, Dean R Madden, Jette S Kastrup, Peter D Skottrup

Open access · greenAbstract read
In one paragraph

Article in International journal of biological macromolecules, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.2field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Rasmus P ClausenDepartment of Drug Design and Pharmacology, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark. Electronic address: rac@sund.ku.dk.
Andreas Ø MohrDepartment of Drug Design and Pharmacology, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark.
Erik RiiseDepartment of Drug Design and Pharmacology, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark.
Anders A JensenDepartment of Drug Design and Pharmacology, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark.
Avinash GillDepartment of Biochemistry & Cell Biology, Geisel School of Medicine at Dartmouth, Hanover, NH 03755, USA.
Dean R MaddenDepartment of Biochemistry & Cell Biology, Geisel School of Medicine at Dartmouth, Hanover, NH 03755, USA.
Jette S KastrupDepartment of Drug Design and Pharmacology, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark.
Peter D SkottrupDepartment of Drug Design and Pharmacology, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark; Department of Clinical Biochemistry, Copenhagen University Hospital, Hvidovre, DK-2650, Denmark. Electronic address: peter.durand.skottrup@regionh.dk.
University of Copenhagen · DK

Funding

Understanding the role of RNA-binding protein mutations in cancerP20GM113132 · NIGMS · DARTMOUTH COLLEGE · PI MADDEN, DEAN R · 2016 to 2025
$25.9M
Information Fusion in Biomolecular Structure and Motion DeterminationR01GM113240 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI CHIRIKJIAN, GREGORY · 2014 to 2018
$1.9M
NIGMS NIH HHS P20 GM113132NIGMS NIH HHS R01 GM113240
6 · The paper itself

Abstract

A method for development of murine Fab fragments towards extracellular domains of a surface receptor is presented. The GluA4 ionotropic glutamate receptor is used as a model system. Recombinant GluA4 ectodomain comprising both the N-terminal domain (NTD) and the ligand-binding domain (LBD) in one molecule was used for immunization. A Fab-phage library was constructed and a parallel panning approach enabled selection of murine Fab fragments towards either intact ectodomain or the isolated LBD of the GluA4 receptor. One LBD-Fab (FabL9) showed exclusive selectivity for the GluA4 LBD, over a panel of LBDs from GluA2, GluK1, GluK2 and GluD2. Soluble FabL9 was produced in amounts suitable for characterization. Competitive ELISA and rat-brain immunoprecipitation experiments confirmed that the FabL9 epitope is conserved in the LBD and in the intact native receptor. By an alignment of GluA2 and GluA4, the likely binding epitope for FabL9 was predicted. This study demonstrates a simple approach for development of antibody fragments towards specific sub-domains of a large ligand-gated ion channel, and this method could be utilized for all multi-domain surface receptors where antibody domain-selectivity may be desirable. Furthermore, we present for the first time a GluA4 subtype-specific murine Fab fragment targeting the LBD of the receptor.

Indexed as

Peptide LibraryAmino Acid SequenceAnimalsBrainBrain ChemistryClone CellsEnzyme-Linked Immunosorbent AssayEpitopesFemaleImmunizationImmunoglobulin Fab FragmentsImmunoprecipitationMiceMice, Inbred BALB CProtein DomainsProtein MultimerizationEpitopesglutamate receptor ionotropic, AMPA 4Immunoglobulin Fab FragmentsPeptide LibraryReceptors, AMPARecombinant ProteinsFabGluA4Phage

Identifiers

PMID27402461
PMCPMC5145273
OpenAlexW2472946419

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.