Evidence map›Paper›PMID 27402158›Full record

ArticleNucleic acids research2016

Phospho-site mutants of the RNA Polymerase II C-terminal domain alter subtelomeric gene expression and chromatin modification state in fission yeast.

Maki Inada, Robert J Nichols, Jahan-Yar Parsa, Christina M Homer, Ruby A Benn, Reyal S Hoxie, Hiten D Madhani, Stewart Shuman, Beate Schwer, Jeffrey A Pleiss

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
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  4. Article
  5. Article
  6. Article
  7. Ser7 of RNAPII-CTD facilitates heterochromatin formation by linking ncRNA to RNAi.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Maki InadaBiology Department, Ithaca College, Ithaca, NY 14850, USA minada@ithaca.edu.
Robert J NicholsBiology Department, Ithaca College, Ithaca, NY 14850, USA.
Jahan-Yar ParsaDepartment of Biochemistry and Biophysics, UCSF, San Francisco, CA 94158, USA.
Christina M HomerDepartment of Biochemistry and Biophysics, UCSF, San Francisco, CA 94158, USA.
Ruby A BennBiology Department, Ithaca College, Ithaca, NY 14850, USA.
Reyal S HoxieBiology Department, Ithaca College, Ithaca, NY 14850, USA.
Hiten D MadhaniDepartment of Biochemistry and Biophysics, UCSF, San Francisco, CA 94158, USA.
Stewart ShumanMolecular Biology Program, Sloan-Kettering Institute, New York, NY 10065, USA.
Beate SchwerDepartment of Microbiology, Weill Cornell Medical College, New York, NY 10065, USA.
Jeffrey A PleissDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA jpleiss@cornell.edu.
Ithaca College · USUniversity of California, San Francisco · USCornell University · USKettering University · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007618 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ANDERSON, MARK S · 1985 to 2020
$29.6M
STRUCTURAL BIOLOGY TRAINING PROGRAMT32GM008284 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KORTEMME, TANJA · 1988 to 2022
$10.1M
mRNA Capping EnzymesR01GM052470 · NIGMS · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SCHWER, BEATE, SHUMAN, STEWART H · 1995 to 2019
$9.9M
Mechanisms of Gene SilencingR01GM071801 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Hiten D Madhani · 2005 to 2026
$7.1M
Mechanisms of environmentally responsive splicing in S.PombeR01GM098634 · NIGMS · CORNELL UNIVERSITY · PI PLEISS, JEFFREY A · 2011 to 2020
$2.9M
NCI NIH HHS P30 CA008748NIGMS NIH HHS R01 GM052470NIGMS NIH HHS R01 GM071801NIGMS NIH HHS R01 GM098634NIGMS NIH HHS T32 GM007618NIGMS NIH HHS T32 GM008284
6 · The paper itself

Abstract

Eukaryotic gene expression requires that RNA Polymerase II (RNAP II) gain access to DNA in the context of chromatin. The C-terminal domain (CTD) of RNAP II recruits chromatin modifying enzymes to promoters, allowing for transcription initiation or repression. Specific CTD phosphorylation marks facilitate recruitment of chromatin modifiers, transcriptional regulators, and RNA processing factors during the transcription cycle. However, the readable code for recruiting such factors is still not fully defined and how CTD modifications affect related families of genes or regional gene expression is not well understood. Here, we examine the effects of manipulating the Y

Indexed as

Gene Expression Regulation, FungalMutationProtein Interaction Domains and MotifsChromatinCluster AnalysisGene Expression ProfilingGenes, FungalHistonesMethylationPhosphorylationProtein BindingReproducibility of ResultsRNA Polymerase IIRNA, Small NuclearRNA SplicingSchizosaccharomycesChromatinHistonesRNA Polymerase IIRNA, Small Nuclear

Identifiers

PMID27402158
PMCPMC5100562
OpenAlexW2464188555

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.