Evidence map›Paper›PMID 27401554›Full record

ArticleGenes & development2016

The C2H2-ZF transcription factor Zfp335 recognizes two consensus motifs using separate zinc finger arrays.

Brenda Yuyuan Han, Chuan-Sheng Foo, Shuang Wu, Jason G Cyster

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 45 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Brenda Yuyuan HanDepartment of Microbiology and Immunology, University of California at San Francisco, San Francisco, California 94143, USA; Howard Hughes Medical Institute, University of California at San Francisco, San Francisco, California 94143, USA;ORCID 0000-0002-3212-875X
Chuan-Sheng FooDepartment of Computer Science, Stanford University, Stanford, California 94305, USA.
Shuang WuDepartment of Microbiology and Immunology, University of California at San Francisco, San Francisco, California 94143, USA; Howard Hughes Medical Institute, University of California at San Francisco, San Francisco, California 94143, USA;
Jason G CysterDepartment of Microbiology and Immunology, University of California at San Francisco, San Francisco, California 94143, USA; Howard Hughes Medical Institute, University of California at San Francisco, San Francisco, California 94143, USA;
Howard Hughes Medical Institute · USStanford University · US

Funding

Cellular and Genetic Analysis of Lymphocyte EgressR01AI074847 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CYSTER, JASON G · 2007 to 2016
$3.8M
Howard Hughes Medical InstituteNIAID NIH HHS R01 AI074847
6 · The paper itself

Abstract

The complexities of DNA recognition by transcription factors (TFs) with multiple Cys2-His2 zinc fingers (C2H2-ZFs) remain poorly studied. We previously reported a mutation (R1092W) in the C2H2-ZF TF Zfp335 that led to selective loss of binding at a subset of targets, although the basis for this effect was unclear. We show that Zfp335 binds DNA and drives transcription via recognition of two distinct consensus motifs by separate ZF clusters and identify the specific motif interaction disrupted by R1092W. Our work presents Zfp335 as a model for understanding how C2H2-ZF TFs may use multiple recognition motifs to control gene expression.

Indexed as

AnimalsDNA-Binding ProteinsGene Expression RegulationHEK293 CellsHumansIntracellular Signaling Peptides and ProteinsJurkat CellsMiceMutationNuclear ProteinsProtein BindingTranscription FactorsZinc FingersDNA-Binding ProteinsIntracellular Signaling Peptides and ProteinsNuclear ProteinsTranscription Factorszinc finger protein 335, mouseZNF335 protein, humanprotein–DNA bindingtranscription factorsZfp335zinc fingersZNF335

Identifiers

PMID27401554
PMCPMC4949324
OpenAlexW2467169462

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.