Evidence map›Paper›PMID 27401412›Full record

ArticlePharmaceutical research2016

Human Immunodeficiency Virus (HIV) Separation and Enrichment via the Combination of Antiviral Lectin Recognition and a Thermoresponsive Reagent System.

Joseph C Phan, Barrett J Nehilla, Selvi Srinivasan, Robert W Coombs, Kim A Woodrow, James J Lai

Abstract read
PubMed Publisher
In one paragraph

Article in Pharmaceutical research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Exosome Processing and Characterization Approaches for Research and Technology Development.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2022
    Review
  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Joseph C PhanDepartment of Bioengineering, University of Washington, Box 355061, Seattle, Washington, 98195, USA.
Barrett J NehillaNexgenia, Inc., 4000 Mason Rd., Fluke Hall, Suite 312-1, Seattle, Washington, 98195, USA.
Selvi SrinivasanDepartment of Bioengineering, University of Washington, Box 355061, Seattle, Washington, 98195, USA.
Robert W CoombsDivision of Allergy and Infectious Diseases, University of Washington, Seattle, Washington, 98104, USA.
Kim A WoodrowDepartment of Bioengineering, University of Washington, Box 355061, Seattle, Washington, 98195, USA. woodrow@uw.edu.
James J LaiDepartment of Bioengineering, University of Washington, Box 355061, Seattle, Washington, 98195, USA. jilai@uw.edu.
University of Washington · USNexgenia (United States) · US

Funding

Validation, CLIA and Qualification (VQC): Enhancing the RS ratio as a tool for AIDS Clinical Trial Group (ACTG) tuberculosis trialsUM1AI106701 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Grace M Aldrovandi · 2014 to 2026
$116.8M
University of Washington/Fred Hutch Center for AIDS ResearchP30AI027757 · NIAID · UNIVERSITY OF WASHINGTON · PI Kenneth Sherr · 1988 to 2026
$104.9M
Nanoparticle microbicides for delivery of combination antiretroviral drugsR33AI094412 · NIAID · UNIVERSITY OF WASHINGTON · PI WOODROW, KIM A. · 2013 to 2015
$1.6M
Biospecimen preparation technologies to enable high throughput and highly sensitiR21CA174581 · NCI · UNIVERSITY OF WASHINGTON · PI LAI, JAMES · 2013 to 2015
$692k
NCI NIH HHS R21 CA174581NIAID NIH HHS P30 AI027757NIAID NIH HHS R33 AI094412NIAID NIH HHS UM1 AI106701
6 · The paper itself

Abstract

purposeIn order to improve the detection limit of existing HIV diagnostic assays, we explored the use of a temperature-responsive magnetic nanoparticle reagent system in conjunction with cyanovirin-N for HIV recognition to rapidly and efficiently concentrate viral particles from larger sample volumes, ~ 1 ml.

methodsCyanovirin-N (CVN) mutant, Q62C, was expressed, biotinylated, and then complexed with a thermally responsive polymer-streptavidin conjugate. Confirmation of protein expression/activity was performed using matrix assisted laser desorption/ionization (MALDI) and a TZM-bl HIV inhibition assay. Biotinylated CVN mutant recognition with gp120 was characterized using surface plasmon resonance (SPR). Virus separation and enrichment using a thermoresponsive magnetic nanoparticle reagent system were measured using RT-PCR.

resultsBiotinylated Q62C exhibited a KD of 0.6 nM to gp120. The temperature-responsive binary reagent system achieved a maximum viral capture of nearly 100% HIV, 1 × 10(5) virus copies in 100 μl, using pNIPAAm-Q62C within 30 minutes. Additionally, the same reagent system achieved nearly 9-fold enrichment by processing a 10-times larger sample of 1000 μl (Fig. 3).

conclusionThis work demonstrated a temperature-responsive reagent system that provides enrichment of HIV using antiviral lectin CVN for recognition, which is potentially amenable for use in point-of-care settings.

Indexed as

Antiviral AgentsBacterial ProteinsCarrier ProteinsHIV-1HumansLectinsProtein BindingSurface Plasmon ResonanceTemperatureAntiviral AgentsBacterial ProteinsCarrier Proteinscyanovirin NLectinsconcentrationcyanovirin-NHIVmagnetic nanoparticlespoly(N-isopropylacrylamide)sensitivity

Identifiers

PMID27401412
OpenAlexW2468291792

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.