Evidence map›Paper›PMID 27401177›Full record

ArticleGenome biology and evolution2016

The Transcriptomic Evolution of Mammalian Pregnancy: Gene Expression Innovations in Endometrial Stromal Fibroblasts.

Koryu Kin, Jamie Maziarz, Arun R Chavan, Manasi Kamat, Sreelakshmi Vasudevan, Alyssa Birt, Deena Emera, Vincent J Lynch, Troy L Ott, Mihaela Pavlicev and 1 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 47 citations in OpenAlex.

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  11. Unique Aspects of Human Placentation.International journal of molecular sciences · 2021
    Review
  12. Article
  13. Review
  14. Article
  15. Endometrial Decidualization: The Primary Driver of Pregnancy Health.International journal of molecular sciences · 2020
    Review
  16. Stress-Induced Evolutionary Innovation: A Mechanism for the Origin of Cell Types.BioEssays : news and reviews in molecular, cellular and developmental biology · 2019
    Review
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Koryu KinDepartment of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut Yale Systems Biology Institute, Yale University, West Haven, Connecticut.
Jamie MaziarzYale Systems Biology Institute, Yale University, West Haven, Connecticut.
Arun R ChavanDepartment of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut Yale Systems Biology Institute, Yale University, West Haven, Connecticut.
Manasi KamatDepartment of Animal Science, Center for Reproductive Biology and Health, Pennsylvania State University, Stage College, Pennsylvania.
Sreelakshmi VasudevanDepartment of Animal Science, Center for Reproductive Biology and Health, Pennsylvania State University, Stage College, Pennsylvania.
Alyssa BirtDepartment of Animal Science, Center for Reproductive Biology and Health, Pennsylvania State University, Stage College, Pennsylvania.
Deena EmeraDepartment of Genetics, Yale School of Medicine, Yale University, New Haven, Connecticut.
Vincent J LynchDepartment of Human Genetics, University of Chicago, Chicago, Illinois.
Troy L OttDepartment of Animal Science, Center for Reproductive Biology and Health, Pennsylvania State University, Stage College, Pennsylvania.
Mihaela PavlicevDepartment of Pediatrics, Cincinnati Children's Hospital and Medical Center, Cincinnati, Ohio.
Günter P WagnerDepartment of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut Yale Systems Biology Institute, Yale University, West Haven, Connecticut Department of Obstetrics, Gynecology and Reproductive Sciences, Yale Medical School, New Haven, Connecticut Department of Obstetrics and Gynecology, Wayne State University, Detroit, Michigan gunter.wagner@yale.edu.
Pennsylvania State University · USYale University · USCincinnati Children's Hospital Medical Center · USUniversity of Chicago · USWayne State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The endometrial stromal fibroblast (ESF) is a cell type present in the uterine lining of therian mammals. In the stem lineage of eutherian mammals, ESF acquired the ability to differentiate into decidual cells in order to allow embryo implantation. We call the latter cell type "neo-ESF" in contrast to "paleo-ESF" which is homologous to eutherian ESF but is not able to decidualize. In this study, we compare the transcriptomes of ESF from six therian species: Opossum (Monodelphis domestica; paleo-ESF), mink, rat, rabbit, human (all neo-ESF), and cow (secondarily nondecidualizing neo-ESF). We find evidence for strong stabilizing selection on transcriptome composition suggesting that the expression of approximately 5,600 genes is maintained by natural selection. The evolution of neo-ESF from paleo-ESF involved the following gene expression changes: Loss of expression of genes related to inflammation and immune response, lower expression of genes opposing tissue invasion, increased markers for proliferation as well as the recruitment of FOXM1, a key gene transiently expressed during decidualization. Signaling pathways also evolve rapidly and continue to evolve within eutherian lineages. In the bovine lineage, where invasiveness and decidualization were secondarily lost, we see a re-expression of genes found in opossum, most prominently WISP2, and a loss of gene expression related to angiogenesis. The data from this and previous studies support a scenario, where the proinflammatory paleo-ESF was reprogrammed to express anti-inflammatory genes in response to the inflammatory stimulus coming from the implanting conceptus and thus paving the way for extended, trans-cyclic gestation.

Indexed as

Evolution, MolecularAnimalsCattleEndometriumEpithelial CellsFemaleFibroblastsGene Expression Regulation, DevelopmentalHumansMinkPregnancyRabbitsRatsSignal TransductionStromal CellsTranscriptomecell type evolutionendometrial stromal cellsEutheriaMarsupialiatranscriptome evolution

Identifiers

PMID27401177
PMCPMC5010902
OpenAlexW2468666290

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.