Evidence map›Paper›PMID 27400931›Full record

ArticleJournal of neurovirology2017

Specific amino acids in HIV-1 Vpr are significantly associated with differences in patient neurocognitive status.

Will Dampier, Gregory C Antell, Benjamas Aiamkitsumrit, Michael R Nonnemacher, Jeffrey M Jacobson, Vanessa Pirrone, Wen Zhong, Katherine Kercher, Shendra Passic, Jean W Williams and 8 more

Abstract read
In one paragraph

Article in Journal of neurovirology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Clinical and Genetic Risk Prediction of Cognitive Impairment After Blood or Marrow Transplantation for Hematologic Malignancy.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2020
    Article
  11. Review
  12. Article
  13. Genetic variation and function of the HIV-1 Tat protein.Medical microbiology and immunology · 2019
    Review
  14. The HIV-1 Vpr Protein: A Multifaceted Target for Therapeutic Intervention.International journal of molecular sciences · 2017
    Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Will DampierDepartment of Microbiology and Immunology, Drexel University College of Medicine, Philadelphia, PA, USA.
Gregory C AntellDepartment of Microbiology and Immunology, Drexel University College of Medicine, Philadelphia, PA, USA.
Benjamas AiamkitsumritDepartment of Microbiology and Immunology, Drexel University College of Medicine, Philadelphia, PA, USA.
Michael R NonnemacherDepartment of Microbiology and Immunology, Drexel University College of Medicine, Philadelphia, PA, USA.
Jeffrey M JacobsonDepartment of Microbiology and Immunology, Drexel University College of Medicine, Philadelphia, PA, USA.
Vanessa PirroneDepartment of Microbiology and Immunology, Drexel University College of Medicine, Philadelphia, PA, USA.
Wen ZhongDepartment of Microbiology and Immunology, Drexel University College of Medicine, Philadelphia, PA, USA.
Katherine KercherDepartment of Microbiology and Immunology, Drexel University College of Medicine, Philadelphia, PA, USA.
Shendra PassicDepartment of Microbiology and Immunology, Drexel University College of Medicine, Philadelphia, PA, USA.
Jean W WilliamsDepartment of Microbiology and Immunology, Drexel University College of Medicine, Philadelphia, PA, USA.
Tony JamesDepartment of Microbiology and Immunology, Drexel University College of Medicine, Philadelphia, PA, USA.
Kathryn N DevlinDepartment of Psychology, Temple University, Philadelphia, PA, USA.
Tania GiovannettiDepartment of Psychology, Temple University, Philadelphia, PA, USA.
David J LibonDepartment of Geriatrics and Gerontology, New Jersey Institute for Successful Aging, School of Osteopathic Medicine, Rowan University, Stratford, NJ, USA.
Zsofia SzepDepartment of Medicine, Division of Infectious Diseases and HIV Medicine, Drexel University College of Medicine, Philadelphia, PA, USA.
Garth D EhrlichDepartment of Microbiology and Immunology, Drexel University College of Medicine, Philadelphia, PA, USA.
Brian WigdahlDepartment of Microbiology and Immunology, Drexel University College of Medicine, Philadelphia, PA, USA.
Fred C KrebsDepartment of Microbiology and Immunology, Drexel University College of Medicine, Philadelphia, PA, USA. fred.krebs@drexelmed.edu.

Funding

Viral Gene Editing and Bioinformatics Core for Institution # 269291P30MH092177 · NIMH · TEMPLE UNIV OF THE COMMONWEALTH · PI SHOHREH AMINI · 2011 to 2026
$24.9M
NATIONAL NEUROLOGICAL AIDS BANKU24MH100929 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SINGER, ELYSE J · 2013 to 2023
$12.5M
Texas NeuroAIDS Research CenterU24MH100930 · NIMH · UNIVERSITY OF TEXAS MED BR GALVESTON · PI GELMAN, BENJAMIN B. · 2013 to 2023
$12.1M
Interdisciplinary And Translational Research Training In NeurohivT32MH079785 · NIMH · TEMPLE UNIV OF THE COMMONWEALTH · PI Kamel Khalili · 2008 to 2026
$5.4M
High Specificity HIV-1 Markers Predictive of Neuro-AIDSR01DA019807 · NIDA · DREXEL UNIVERSITY · PI WIGDAHL, BRIAN · 2004 to 2014
$5.1M
HIV-1 Tat genetic variation impacts NeuroAIDSR01NS089435 · NINDS · DREXEL UNIVERSITY · PI KORTAGERE, SANDHYA, NONNEMACHER, MICHAEL R · 2015 to 2024
$5.0M
NEUROLOGICAL &LYMPHOID FACTORS IN HIV1 LTR ACTIVATIONR01NS032092 · NINDS · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI WIGDAHL, BRIAN · 1993 to 2011
$3.9M
Co-evolution of HIV-1 Regulators in CNS DiseaseR01NS046263 · NINDS · DREXEL UNIVERSITY · PI WIGDAHL, BRIAN · 2004 to 2009
$1.8M
NIDA NIH HHS R01 DA019807NIMH NIH HHS P30 MH092177NIMH NIH HHS T32 MH079785NIMH NIH HHS U24 MH100929NIMH NIH HHS U24 MH100930NINDS NIH HHS R01 NS032092NINDS NIH HHS R01 NS046263NINDS NIH HHS R01 NS089435
6 · The paper itself

Abstract

Even in the era of combination antiretroviral therapies used to combat human immunodeficiency virus type 1 (HIV-1) infection, up to 50 % of well-suppressed HIV-1-infected patients are still diagnosed with mild neurological deficits referred to as HIV-associated neurocognitive disorders (HAND). The multifactorial nature of HAND likely involves the HIV-1 accessory protein viral protein R (Vpr) as an agent of neuropathogenesis. To investigate the effect of naturally occurring variations in Vpr on HAND in well-suppressed HIV-1-infected patients, bioinformatic analyses were used to correlate peripheral blood-derived Vpr sequences with patient neurocognitive performance, as measured by comprehensive neuropsychological assessment and the resulting Global Deficit Score (GDS). Our studies revealed unique associations between GDS and the presence of specific amino acid changes in peripheral blood-derived Vpr sequences [neuropsychological impairment Vpr (niVpr) variants]. Amino acids N41 and A55 in the Vpr sequence were associated with more pronounced neurocognitive deficits (higher GDS). In contrast, amino acids I37 and S41 were connected to measurably lower GDS. All niVpr variants were also detected in DNA isolated from HIV-1-infected brain tissues. The implication of these results is that niVpr variants alter the genesis and/or progression of HAND through differences in Vpr-mediated effects in the peripheral blood and/or the brain.

Indexed as

Host-Pathogen InteractionsPolymorphism, GeneticAdultAmino Acid SubstitutionAntiretroviral Therapy, Highly ActiveAntiviral AgentsBrainCognitionCognitive DysfunctionCohort StudiesFemaleGene ExpressionHIV-1HIV InfectionsHumansMaleAntiviral Agentsvpr Gene Products, Human Immunodeficiency VirusGDSHANDHIVNeuropathogenesisQuasispeciesSequenceVpr

Identifiers

PMID27400931
PMCPMC5226925

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.