Evidence map›Paper›PMID 27399969›Full record

ArticleNature genetics2016

Genomic analysis of snub-nosed monkeys (Rhinopithecus) identifies genes and processes related to high-altitude adaptation.

Li Yu, Guo-Dong Wang, Jue Ruan, Yong-Bin Chen, Cui-Ping Yang, Xue Cao, Hong Wu, Yan-Hu Liu, Zheng-Lin Du, Xiao-Ping Wang and 23 more

Open access · hybridAbstract read
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In one paragraph

Article in Nature genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
9.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed, 149 citations in OpenAlex.

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27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors at 14 institutions in 3 countries.

Li YuState Key Laboratory for Conservation and Utilization of Bio-resource in Yunnan, Yunnan University, Kunming, China.
Guo-Dong WangState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.
Jue RuanBeijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Yong-Bin ChenKey Laboratory of Animal Models and Human Disease Mechanisms of the Chinese Academy of Sciences and Yunnan Province, Kunming Institute of Zoology, Kunming, China.
Cui-Ping YangKey Laboratory of Animal Models and Human Disease Mechanisms of the Chinese Academy of Sciences and Yunnan Province, Kunming Institute of Zoology, Kunming, China.
Xue CaoState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.
Hong WuState Key Laboratory for Conservation and Utilization of Bio-resource in Yunnan, Yunnan University, Kunming, China.
Yan-Hu LiuState Key Laboratory for Conservation and Utilization of Bio-resource in Yunnan, Yunnan University, Kunming, China.
Zheng-Lin DuBeijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Xiao-Ping WangState Key Laboratory for Conservation and Utilization of Bio-resource in Yunnan, Yunnan University, Kunming, China.
Jing YangState Key Laboratory for Conservation and Utilization of Bio-resource in Yunnan, Yunnan University, Kunming, China.
Shao-Chen ChengState Key Laboratory for Conservation and Utilization of Bio-resource in Yunnan, Yunnan University, Kunming, China.
Li ZhongState Key Laboratory for Conservation and Utilization of Bio-resource in Yunnan, Yunnan University, Kunming, China.
Lu WangState Key Laboratory for Conservation and Utilization of Bio-resource in Yunnan, Yunnan University, Kunming, China.
Xuan WangState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.
Jing-Yang HuState Key Laboratory for Conservation and Utilization of Bio-resource in Yunnan, Yunnan University, Kunming, China.
Lu FangBeijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Bing BaiState Key Laboratory for Conservation and Utilization of Bio-resource in Yunnan, Yunnan University, Kunming, China.
Kai-Le WangBeijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Na YuanBeijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Shi-Fang WuState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.
Bao-Guo LiCollege of Life Sciences, Northwest University, Xi'an, China.
Jin-Guo ZhangBeijing Key Laboratory of Captive Wildlife Technologies, Beijing Zoo, Beijing, China.
Ye-Qin YangFanjing Mountain National Nature Reserve, Guizhou, China.
Cheng-Lin ZhangBeijing Key Laboratory of Captive Wildlife Technologies, Beijing Zoo, Beijing, China.
Yong-Cheng LongInstitue of Primatology and Human Evolution, Sun Yat-Sen University, Guangzhou, China.
Hai-Shu LiNujiang Prefecture Forestry Bureau, Yunnan, China.
Jing-Yuan YangShennongjia National Nature Reserve, Hubei, China.
David M IrwinDepartment of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, Ontario, Canada.
Oliver A RyderSan Diego Zoo Institute for Conservation Research, Escondido, California, USA.
Ying LiInstitute of Animal Genetics and Breeding, Sichuan Agricultural University, Ya'an, China.
Chung-I WuBeijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Ya-Ping ZhangState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.
Yunnan University · CNChinese Academy of Sciences · CNKunming Institute of Zoology · CNBeijing Institute of Genomics · CNGuangzhou Zoo · CNAgricultural Genomics Institute at Shenzhen · CNFanjingshan National Nature Reserve · CNKunming Medical University · CNSan Diego Zoo Institute for Conservation Research · USShaanxi Institute of Zoology · CNSichuan Agricultural University · CNSun Yat-sen University · CNUniversity of Toronto · CAYunnan Academy of Forestry · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The snub-nosed monkey genus Rhinopithecus includes five closely related species distributed across altitudinal gradients from 800 to 4,500 m. Rhinopithecus bieti, Rhinopithecus roxellana, and Rhinopithecus strykeri inhabit high-altitude habitats, whereas Rhinopithecus brelichi and Rhinopithecus avunculus inhabit lowland regions. We report the de novo whole-genome sequence of R. bieti and genomic sequences for the four other species. Eight shared substitutions were found in six genes related to lung function, DNA repair, and angiogenesis in the high-altitude snub-nosed monkeys. Functional assays showed that the high-altitude variant of CDT1 (Ala537Val) renders cells more resistant to UV irradiation, and the high-altitude variants of RNASE4 (Asn89Lys and Thr128Ile) confer enhanced ability to induce endothelial tube formation in vitro. Genomic scans in the R. bieti and R. roxellana populations identified signatures of selection between and within populations at genes involved in functions relevant to high-altitude adaptation. These results provide valuable insights into the adaptation to high altitude in the snub-nosed monkeys.

Indexed as

GenomeAdaptation, PhysiologicalAmino Acid SequenceAnimalsColobinaeGenetic MarkersGenomicsPhylogenySequence Homology, Amino AcidGenetic Markers

Identifiers

PMID27399969
OpenAlexW2474640767

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.