Evidence map›Paper›PMID 27399153›Full record

ArticleACS nano2016

Rapid and Label-Free Strategy to Isolate Aptamers for Metal Ions.

Hao Qu, Andrew T Csordas, Jinpeng Wang, Seung Soo Oh, Michael S Eisenstein, Hyongsok Tom Soh

Abstract read
In one paragraph

Article in ACS nano, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 170 citations in OpenAlex.

  1. Article
  2. Article
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  5. Article
  6. Article
  7. Rationally Designed DNA-Based Scaffolds and Switching Probes for Protein Sensing.Advances in biochemical engineering/biotechnology · 2024
    Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Monitoring leaching of CdBiosensors & bioelectronics · 2023
    Article
  13. Review
  14. Aptamer-based biosensors for virus protein detection.Trends in analytical chemistry : TRAC · 2022
    Review
  15. Article
  16. Article
  17. A Polyclonal SELEX Aptamer Library Allows Differentiation ofJournal of fungi (Basel, Switzerland) · 2022
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 2 countries.

Hao QuSchool of Biological and Medical Engineering, Hefei University of Technology , Hefei, Anhui 230009, China.
Andrew T CsordasMaterials Department, University of California at Santa Barbara , Santa Barbara, California 93111, United States.
Jinpeng WangAptitude Medical Systems , Santa Barbara, California 93105, United States.
Seung Soo OhDepartment of Molecular Biology, Massachusetts General Hospital/Harvard Medical School , Boston, Massachusetts 02114, United States.
Michael S EisensteinMaterials Department, University of California at Santa Barbara , Santa Barbara, California 93111, United States.
Hyongsok Tom SohDepartment of Electrical Engineering and Department of Radiology, Stanford University , Stanford, California 94305, United States.
University of California, Santa Barbara · USAptitude Medical Systems · USHarvard University · USHefei University of Technology · CNStanford University · US

Funding

Midwest Progenitor Cell ConsortiumU01HL099773 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI THOMSON, JAMES ALEXANDER · 2009 to 2015
$7.8M
NHLBI NIH HHS U01 HL099773
6 · The paper itself

Abstract

Generating aptamers that bind to specific metal ions is challenging because existing aptamer discovery methods typically require chemical labels or modifications that can alter the structure and properties of the ions. In this work, we report an aptamer discovery method that enables us to generate high-quality structure-switching aptamers (SSAs) that undergo a conformational change upon binding a metal ion target, without the requirement of labels or chemical modifications. Our method is more efficient than conventional selection methods because it enables direct measurement of target binding via fluorescence-activated cell sorting (FACS), isolating only the desired aptamers with the highest affinity. Using this strategy, we obtained a highly specific DNA SSA with ∼30-fold higher affinity than the best aptamer for Hg(2+) in the literature. We also discovered DNA aptamers that bind to Cu(2+) with excellent affinity and specificity. Both aptamers were obtained within four rounds of screening, demonstrating the efficiency of our aptamer discovery method. Given the growing availability of FACS, we believe our method offers a general strategy for discovering high-quality aptamers for other ions and small-molecule targets in an efficient and reproducible manner.

Indexed as

Aptamers, NucleotideFlow CytometryIonsMetalsSELEX Aptamer TechniqueAptamers, NucleotideIonsMetalsaptamersfluorescence-activated cell sortingmetal ionsmolecular screening

Identifiers

PMID27399153
PMCPMC5653223
OpenAlexW2474099094

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.