Evidence map›Paper›PMID 27398315›Full record

ArticleFEBS open bio2016

Characterization of group II chaperonins from an acidothermophilic archaeon Picrophilus torridus.

Yohei Y Yamamoto, Kanako Tsuchida, Keiichi Noguchi, Naoki Ogawa, Hiroshi Sekiguchi, Yuji C Sasaki, Masafumi Yohda

Open access · goldAbstract read
In one paragraph

Article in FEBS open bio, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Yohei Y YamamotoDepartment of Biotechnology and Life Science Tokyo University of Agriculture and Technology Koganei Japan; Research Fellow of Japan Society for the Promotion of Science Chiyoda, Tokyo Japan.
Kanako TsuchidaDepartment of Biotechnology and Life Science Tokyo University of Agriculture and Technology Koganei Japan.
Keiichi NoguchiInstrumentation Analysis Center Tokyo University of Agriculture and Technology Koganei Japan.
Naoki OgawaDepartment of Integrated Science in Physics and Biology College of Humanities and Sciences Nihon University Setagaya-ku Japan.
Hiroshi SekiguchiJapan Synchrotron Radiation Research Institute Sayo Japan.
Yuji C SasakiGraduate School of Frontier Sciences University of Tokyo Kashiwa Japan.
Masafumi YohdaDepartment of Biotechnology and Life Science Tokyo University of Agriculture and Technology Koganei Japan.
Tokyo University of Agriculture and Technology · JPJapan Synchrotron Radiation Research Institute · JPNihon University · JPThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chaperonins are a type of molecular chaperone that assist in the folding of proteins. Group II chaperonins play an important role in the proteostasis in the cytosol of archaea and eukarya. In this study, we expressed, purified, and characterized group II chaperonins from an acidothermophilic archaeon Picrophilus torridus. Two genes exist for group II chaperonins, and both of the gene products assemble to form double-ring complexes similar to other archaeal group II chaperonins. One of the Picrophilus chaperonins, PtoCPNα, was able to refold denatured GFP at 50 °C. As expected, PtoCPNα exhibited an ATP-dependent conformational change that is observed by the change in fluorescence and diffracted X-ray tracking (DXT). In contrast, PtoCPNα lost its protein folding ability at moderate temperatures, becoming unable to interact with unfolded proteins. At lower temperatures, the release rate of the captured GFP from PtoCPNα was accelerated, and the affinity of denatured protein to PtoCPNα was weakened at the lower temperatures. Unexpectedly, in the DXT experiment, the fine motions were enhanced at the lower temperatures. Taken together, the results suggest that the fine tilting motions of the apical domain might correlate with the affinity of group II chaperonins for denatured proteins.

Indexed as

archaeachaperonechaperonindynamicsPicrophilus torridussingle molecule

Identifiers

PMID27398315
PMCPMC4932455
OpenAlexW2404035681

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.