Evidence map›Paper›PMID 27398221›Full record

ArticleCanine genetics and epidemiology2016

A large deletion in RPGR causes XLPRA in Weimaraner dogs.

Regina Kropatsch, Denis A Akkad, Matthias Frank, Carsten Rosenhagen, Janine Altmüller, Peter Nürnberg, Jörg T Epplen, Gabriele Dekomien

Open access · goldAbstract read
In one paragraph

Article in Canine genetics and epidemiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Canine models of inherited retinal diseases: from neglect to well-recognized translational value.Mammalian genome : official journal of the International Mammalian Genome Society · 2025
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  9. AGenes · 2019
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  11. Complex StructuralG3 (Bethesda, Md.) · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Regina KropatschDepartment of Human Genetics, Ruhr-University, Universitätsstraße 150, 44801 Bochum, Germany.
Denis A AkkadDepartment of Human Genetics, Ruhr-University, Universitätsstraße 150, 44801 Bochum, Germany.
Matthias FrankKleintierklinik Frank, Mooswaldallee 10 i, 79108 Freiburg, Germany.
Carsten RosenhagenTierärztliche Überweisungspraxis, Lortzingstraße 12, 28209 Bremen, Germany.
Janine AltmüllerCologne Center for Genomics, University of Cologne, Weyertal 115 b, 50931 Cologne, Germany ; Institute of Human Genetics, University of Cologne, Kerpener Str. 34, 50931 Cologne, Germany.
Peter NürnbergCologne Center for Genomics, University of Cologne, Weyertal 115 b, 50931 Cologne, Germany ; Center for Molecular Medicine Cologne (CMMC), University of Cologne, Robert-Koch Str. 21, 50931 Cologne, Germany ; Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, Joseph-Stelzmann-Str. 26, 50931 Cologne, Germany.
Jörg T EpplenDepartment of Human Genetics, Ruhr-University, Universitätsstraße 150, 44801 Bochum, Germany ; Faculty of Health, University Witten-Herdecke, Alfred-Herrhausen-Strasse 50, 58448 Witten, Germany.
Gabriele DekomienDepartment of Human Genetics, Ruhr-University, Universitätsstraße 150, 44801 Bochum, Germany.
Ruhr University Bochum · DEUniversity of Cologne · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundProgressive retinal atrophy (PRA) belongs to a group of inherited retinal disorders associated with gradual vision impairment due to degeneration of retinal photoreceptors in various dog breeds. PRA is highly heterogeneous, with autosomal dominant, recessive or X-linked modes of inheritance. In this study we used exome sequencing to investigate the molecular genetic basis of a new type of PRA, which occurred spontaneously in a litter of German short-hair Weimaraner dogs.

resultsWhole exome sequencing in two PRA-affected Weimaraner dogs identified a large deletion comprising the first four exons of the X-linked retinitis pigmentosa GTPase regulator (RPGR) gene known to be involved in human retinitis pigmentosa and canine PRA. Screening of 16 individuals in the corresponding pedigree of short-hair Weimaraners by qPCR, verified the deletion in hemizygous or heterozygous state in one male and six female dogs, respectively. The mutation was absent in 88 additional unrelated Weimaraners. The deletion was not detectable in the parents of one older female which transmitted the mutation to her offspring, indicating that the RPGR deletion represents a de novo mutation concerning only recent generations of the Weimaraner breed in Germany.

conclusionOur results demonstrate the value of an existing DNA biobank combined with exome sequencing to identify the underlying genetic cause of a spontaneously occurring inherited disease. Identification of the genetic cause has allowed the development of a diagnostic test, which should help to eradicate the PRA causing mutation from the respective canine line. Thus, planning of future pairings is facilitated and manifestation of this type of PRA can be prevented.

Indexed as

Exome sequencingProgressive retinal atrophyRPGR (retinitis pigmentosa GTPase regulator) geneWeimaraner

Identifiers

PMID27398221
PMCPMC4938961
OpenAlexW2460305938

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.