Evidence map›Paper›PMID 27397506›Full record

ArticleCell2016

Ultra-High Resolution 3D Imaging of Whole Cells.

Fang Huang, George Sirinakis, Edward S Allgeyer, Lena K Schroeder, Whitney C Duim, Emil B Kromann, Thomy Phan, Felix E Rivera-Molina, Jordan R Myers, Irnov Irnov and 9 more

Abstract read
In one paragraph

Article in Cell, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 148 papers.

0numbers the graph read from it
0cells of the map it votes in
148citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

148 citing papers in PubMed.

  1. Article
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  10. Review
  11. Ballistic Microscopy (BaM).bioRxiv : the preprint server for biology · 2025
    Article
  12. Review
  13. Cryosectioning-enhanced super-resolution microscopy for single-protein imaging across cells and tissues.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

88 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Fang HuangDepartment of Cell Biology, School of Medicine, Yale University, New Haven, CT 06520, USA; Weldon School of Biomedical Engineering, Purdue University, West Lafayette, IN 47907, USA.
George SirinakisDepartment of Cell Biology, School of Medicine, Yale University, New Haven, CT 06520, USA; The Gurdon Institute, University of Cambridge, Cambridge CB2 1QN, UK.
Edward S AllgeyerDepartment of Cell Biology, School of Medicine, Yale University, New Haven, CT 06520, USA; The Gurdon Institute, University of Cambridge, Cambridge CB2 1QN, UK.
Lena K SchroederDepartment of Cell Biology, School of Medicine, Yale University, New Haven, CT 06520, USA.
Whitney C DuimDepartment of Cell Biology, School of Medicine, Yale University, New Haven, CT 06520, USA; Department of Chemistry, Harvey Mudd College, Claremont, CA 91711, USA.
Emil B KromannDepartment of Cell Biology, School of Medicine, Yale University, New Haven, CT 06520, USA; Department of Biomedical Engineering, Yale University, CT 06520, USA.
Thomy PhanDepartment of Cell Biology, School of Medicine, Yale University, New Haven, CT 06520, USA.
Felix E Rivera-MolinaDepartment of Cell Biology, School of Medicine, Yale University, New Haven, CT 06520, USA.
Jordan R MyersDepartment of Cell Biology, School of Medicine, Yale University, New Haven, CT 06520, USA.
Irnov IrnovMicrobial Sciences Institute, Yale University, West Haven, CT 06516, USA; Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT 06520, USA.
Mark LessardThe Jackson Laboratory, Bar Harbor, ME 04609, USA.
Yongdeng ZhangDepartment of Cell Biology, School of Medicine, Yale University, New Haven, CT 06520, USA.
Mary Ann HandelThe Jackson Laboratory, Bar Harbor, ME 04609, USA.
Christine Jacobs-WagnerMicrobial Sciences Institute, Yale University, West Haven, CT 06516, USA; Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT 06520, USA; Howard Hughes Medical Institute, Yale University, New Haven, CT 06520, USA; Department of Microbial Pathogenesis, Yale School of Medicine, New Haven, CT 06520, USA.
C Patrick LuskDepartment of Cell Biology, School of Medicine, Yale University, New Haven, CT 06520, USA.
James E RothmanDepartment of Cell Biology, School of Medicine, Yale University, New Haven, CT 06520, USA; Nanobiology Institute, Yale University, West Haven, CT 06516, USA.
Derek ToomreDepartment of Cell Biology, School of Medicine, Yale University, New Haven, CT 06520, USA; Nanobiology Institute, Yale University, West Haven, CT 06516, USA.
Martin J BoothDepartment of Engineering Science, University of Oxford, Oxford OX1 3PJ, UK; Centre for Neural Circuits and Behaviour, University of Oxford, Oxford OX1 3SR, UK.
Joerg BewersdorfDepartment of Cell Biology, School of Medicine, Yale University, New Haven, CT 06520, USA; Department of Biomedical Engineering, Yale University, CT 06520, USA; Nanobiology Institute, Yale University, West Haven, CT 06516, USA. Electronic address: joerg.bewersdorf@yale.edu.

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Shared Resource ManagementP30CA034196 · NCI · JACKSON LABORATORY · PI William Carl Skarnes · 1985 to 2026
$61.9M
Yale Diabetes Research CenterP30DK045735 · NIDDK · YALE UNIVERSITY · PI Richard A Flavell · 1993 to 2026
$44.0M
PRDM9 and Meiotic Regulatory NetworksP01GM099640 · NIGMS · JACKSON LABORATORY · PI PAIGEN, KENNETH · 2013 to 2017
$8.2M
New Mechanisms of Heterotaxy and Congenital Heart Disease: Nucleoporins at CiliaR01HL124402 · NHLBI · YALE UNIVERSITY · PI KHOKHA, MUSTAFA K, LUSK, CHARLES PATRICK · 2015 to 2022
$5.5M
The mechanism of ESCRT-mediated surveillance of the nuclear envelope barrierR01GM105672 · NIGMS · YALE UNIVERSITY · PI LUSK, CHARLES PATRICK · 2013 to 2025
$4.6M
Temporal and Spatial Control of the Cell Cycle in Caulobacter CrescentusR01GM065835 · NIGMS · YALE UNIVERSITY · PI JACOBS-WAGNER, CHRISTINE · 2003 to 2016
$3.7M
Regulation of Vesicle TrafficR35GM118084 · NIGMS · YALE UNIVERSITY · PI ROTHMAN, JAMES · 2016 to 2019
$3.4M
A super-resolution microscope for research and educationS10OD020142 · OD · YALE UNIVERSITY · PI NATHANSON, MICHAEL H · 2015 to 2015
$600k
New Toolkit for Imaging and Controlling Early CiliogenesisR21HD078851 · NICHD · YALE UNIVERSITY · PI TOOMRE, DEREK K. · 2014 to 2015
$453k
Cancer Research UK C6946/A14492Howard Hughes Medical InstituteNCATS NIH HHS UL1 TR001863NCI NIH HHS P30 CA034196NHLBI NIH HHS R01 HL124402NICHD NIH HHS R21 HD078851NIDDK NIH HHS P30 DK045735NIGMS NIH HHS P01 GM099640NIGMS NIH HHS R01 GM065835NIGMS NIH HHS R01 GM105672NIGMS NIH HHS R35 GM118084NIH HHS S10 OD020142Wellcome Trust 092096Wellcome Trust 095927/A/11/ZWellcome Trust 203285/Z/16/Z
6 · The paper itself

Abstract

Fluorescence nanoscopy, or super-resolution microscopy, has become an important tool in cell biological research. However, because of its usually inferior resolution in the depth direction (50-80 nm) and rapidly deteriorating resolution in thick samples, its practical biological application has been effectively limited to two dimensions and thin samples. Here, we present the development of whole-cell 4Pi single-molecule switching nanoscopy (W-4PiSMSN), an optical nanoscope that allows imaging of three-dimensional (3D) structures at 10- to 20-nm resolution throughout entire mammalian cells. We demonstrate the wide applicability of W-4PiSMSN across diverse research fields by imaging complex molecular architectures ranging from bacteriophages to nuclear pores, cilia, and synaptonemal complexes in large 3D cellular volumes.

Indexed as

AnimalsBacteriophagesCOP-Coated VesiclesCytological TechniquesGolgi ApparatusMaleMiceMicroscopy, FluorescenceSingle Molecule ImagingSpermatocytesSynaptonemal Complex

Identifiers

PMID27397506
PMCPMC5005454

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.