Evidence map›Paper›PMID 27392085›Full record

ArticleThe ISME journal2017

Speciation and ecological success in dimly lit waters: horizontal gene transfer in a green sulfur bacteria bloom unveiled by metagenomic assembly.

Tomàs Llorens-Marès, Zhenfeng Liu, Lisa Zeigler Allen, Douglas B Rusch, Matthew T Craig, Chris L Dupont, Donald A Bryant, Emilio O Casamayor

Open access · bronzeAbstract read
In one paragraph

Article in The ISME journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 35 citations in OpenAlex.

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  10. Biosynthesis of the modified tetrapyrroles-the pigments of life.The Journal of biological chemistry · 2020
    Review
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  19. Article
  20. "Frontiers in microbiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Tomàs Llorens-MarèsIntegrative Freshwater Ecology Group, Centro de Estudios Avanzados de Blanes, CEAB-CSIC. Accés Cala Sant Francesc, Girona, Spain.
Zhenfeng LiuDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, State College, PA USA.
Lisa Zeigler AllenMicrobial and Environmental Genomics, J. Craig Venter Institute, San Diego, CA, USA.
Douglas B RuschInformatics Group, J. Craig Venter Institute, Rockville, MD, USA.
Matthew T CraigMicrobial and Environmental Genomics, J. Craig Venter Institute, San Diego, CA, USA.
Chris L DupontMicrobial and Environmental Genomics, J. Craig Venter Institute, San Diego, CA, USA.
Donald A BryantDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, State College, PA USA.
Emilio O CasamayorIntegrative Freshwater Ecology Group, Centro de Estudios Avanzados de Blanes, CEAB-CSIC. Accés Cala Sant Francesc, Girona, Spain.
J. Craig Venter Institute · USCentre d'Estudis Avançats de Blanes · ESMontana State University · USUniversity of Southern California · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A natural planktonic bloom of a brown-pigmented photosynthetic green sulfur bacteria (GSB) from the disphotic zone of karstic Lake Banyoles (NE Spain) was studied as a natural enrichment culture from which a nearly complete genome was obtained after metagenomic assembly. We showed in situ a case where horizontal gene transfer (HGT) explained the ecological success of a natural population unveiling ecosystem-specific adaptations. The uncultured brown-pigmented GSB was 99.7% identical in the 16S rRNA gene sequence to its green-pigmented cultured counterpart Chlorobium luteolum DSM 273

Indexed as

Gene Transfer, HorizontalBacterial ProteinsBacteriochlorophyllsChlorobiumEcosystemLakesMetagenomicsPhotosynthesisRNA, Ribosomal, 16SSpainSulfurBacterial Proteinsbacteriochlorophyll cbacteriochlorophyll eBacteriochlorophyllsRNA, Ribosomal, 16SSulfur

Identifiers

PMID27392085
PMCPMC5315485
OpenAlexW2466719037

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.