Evidence map›Paper›PMID 27392076›Full record

ArticleAmerican journal of human genetics2016

Heterozygous Loss-of-Function SEC61A1 Mutations Cause Autosomal-Dominant Tubulo-Interstitial and Glomerulocystic Kidney Disease with Anemia.

Nikhita Ajit Bolar, Christelle Golzio, Martina Živná, Gaëlle Hayot, Christine Van Hemelrijk, Dorien Schepers, Geert Vandeweyer, Alexander Hoischen, Jeroen R Huyghe, Ann Raes and 28 more

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In one paragraph

Article in American journal of human genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
11.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 155 citations in OpenAlex.

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28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

38 authors at 12 institutions in 5 countries.

Nikhita Ajit BolarCenter of Medical Genetics, Faculty of Medicine and Health Sciences, University of Antwerp and Antwerp University Hospital, Antwerp 2650, Belgium.
Christelle GolzioCenter for Human Disease Modeling and Departments of Cell Biology and Psychiatry, Duke University, Durham, NC 27710, USA.
Martina ŽivnáInstitute for Inherited Metabolic Disorders, Prague, First Faculty of Medicine, Charles University in Prague, 120 00 Prague, Czech Republic.
Gaëlle HayotCenter for Human Disease Modeling and Departments of Cell Biology and Psychiatry, Duke University, Durham, NC 27710, USA.
Christine Van HemelrijkDepartment of Pediatric Nephrology, University Hospital of Ghent, Ghent 9000, Belgium.
Dorien SchepersCenter of Medical Genetics, Faculty of Medicine and Health Sciences, University of Antwerp and Antwerp University Hospital, Antwerp 2650, Belgium.
Geert VandeweyerCenter of Medical Genetics, Faculty of Medicine and Health Sciences, University of Antwerp and Antwerp University Hospital, Antwerp 2650, Belgium.
Alexander HoischenDepartment of Human Genetics, Radboud University Medical Centre, 6500 HB Nijmegen, the Netherlands.
Jeroen R HuygheCenter of Medical Genetics, Faculty of Medicine and Health Sciences, University of Antwerp and Antwerp University Hospital, Antwerp 2650, Belgium.
Ann RaesDepartment of Pediatric Nephrology, University Hospital of Ghent, Ghent 9000, Belgium.
Erve MatthysDepartment of Nephrology, Sint-Jan Hospital, Brugge 8000, Belgium.
Emiel SysDepartment of Nephrology, Sint-Lucas Hospital, Brugge 8310, Belgium.
Myriam AzouDepartment of Nephrology, Sint-Lucas Hospital, Brugge 8310, Belgium.
Marie-Claire GublerINSERM, U983, Paris Cedex 15, France.
Marleen PraetDepartment of Pathology, University Hospital of Ghent, Ghent 9000, Belgium.
Guy Van CampCenter of Medical Genetics, Faculty of Medicine and Health Sciences, University of Antwerp and Antwerp University Hospital, Antwerp 2650, Belgium.
Kelsey McFaddenCenter for Human Disease Modeling and Departments of Cell Biology and Psychiatry, Duke University, Durham, NC 27710, USA.
Igor PediaditakisCenter for Human Disease Modeling and Departments of Cell Biology and Psychiatry, Duke University, Durham, NC 27710, USA.
Anna PřistoupilováInstitute for Inherited Metabolic Disorders, Prague, First Faculty of Medicine, Charles University in Prague, 120 00 Prague, Czech Republic.
Kateřina HodaňováInstitute for Inherited Metabolic Disorders, Prague, First Faculty of Medicine, Charles University in Prague, 120 00 Prague, Czech Republic.
Petr VyleťalInstitute for Inherited Metabolic Disorders, Prague, First Faculty of Medicine, Charles University in Prague, 120 00 Prague, Czech Republic.
Hana HartmannováInstitute for Inherited Metabolic Disorders, Prague, First Faculty of Medicine, Charles University in Prague, 120 00 Prague, Czech Republic.
Viktor StráneckýInstitute for Inherited Metabolic Disorders, Prague, First Faculty of Medicine, Charles University in Prague, 120 00 Prague, Czech Republic.
Helena HůlkováInstitute for Inherited Metabolic Disorders, Prague, First Faculty of Medicine, Charles University in Prague, 120 00 Prague, Czech Republic.
Veronika BarešováInstitute for Inherited Metabolic Disorders, Prague, First Faculty of Medicine, Charles University in Prague, 120 00 Prague, Czech Republic.
Ivana JedličkováInstitute for Inherited Metabolic Disorders, Prague, First Faculty of Medicine, Charles University in Prague, 120 00 Prague, Czech Republic.
Jana SovováInstitute for Inherited Metabolic Disorders, Prague, First Faculty of Medicine, Charles University in Prague, 120 00 Prague, Czech Republic.
Aleš HnízdaInstitute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, 166 10 Prague, Czech Republic.
Kendrah KiddSection on Nephrology, Wake Forest School of Medicine, Medical Center Blvd., Winston-Salem, NC 27157, USA.
Anthony J BleyerSection on Nephrology, Wake Forest School of Medicine, Medical Center Blvd., Winston-Salem, NC 27157, USA.
Richard S SpongDepartment of Medicine, Division of Renal Diseases and Hypertension, University of Minnesota, MN 55455, USA.
Johan Vande WalleDepartment of Pediatric Nephrology, University Hospital of Ghent, Ghent 9000, Belgium.
Geert MortierCenter of Medical Genetics, Faculty of Medicine and Health Sciences, University of Antwerp and Antwerp University Hospital, Antwerp 2650, Belgium.
Han BrunnerDepartment of Human Genetics, Radboud University Medical Centre, 6500 HB Nijmegen, the Netherlands.
Lut Van LaerCenter of Medical Genetics, Faculty of Medicine and Health Sciences, University of Antwerp and Antwerp University Hospital, Antwerp 2650, Belgium.
Stanislav KmochInstitute for Inherited Metabolic Disorders, Prague, First Faculty of Medicine, Charles University in Prague, 120 00 Prague, Czech Republic.
Nicholas KatsanisCenter for Human Disease Modeling and Departments of Cell Biology and Psychiatry, Duke University, Durham, NC 27710, USA.
Bart L LoeysCenter of Medical Genetics, Faculty of Medicine and Health Sciences, University of Antwerp and Antwerp University Hospital, Antwerp 2650, Belgium; Department of Human Genetics, Radboud University Medical Centre, 6500 HB Nijmegen, the Netherlands. Electronic address: bart.loeys@uantwerpen.be.
Charles University · CZDuke University · USUniversity of Antwerp · BEGhent University Hospital · BEAntwerp University Hospital · BEAZ Sint-Lucas · BERadboud University Nijmegen · NLWake Forest University · USAZ Sint-Jan · BECzech Academy of Sciences, Institute of Organic Chemistry and Biochemistry · CZInserm · FRUniversity of Minnesota · US

Funding

Renal Genomics CoreP30DK096493 · NIDDK · DUKE UNIVERSITY · PI WINN, MICHELLE P. · 2012 to 2016
$5.9M
Research Project 3P50DK096415 · NIDDK · DUKE UNIVERSITY · PI KATSANIS, NICHOLAS · 2012 to 2016
$4.2M
Genetic Variation in Age of Onset of Kidney Failure in Uromodulin Kidney DiseaseR21DK106584 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI BLEYER, ANTHONY J · 2015 to 2016
$426k
NIDDK NIH HHS P30 DK096493NIDDK NIH HHS P50 DK096415NIDDK NIH HHS R21 DK106584
6 · The paper itself

Abstract

Autosomal-dominant tubulo-interstitial kidney disease (ADTKD) encompasses a group of disorders characterized by renal tubular and interstitial abnormalities, leading to slow progressive loss of kidney function requiring dialysis and kidney transplantation. Mutations in UMOD, MUC1, and REN are responsible for many, but not all, cases of ADTKD. We report on two families with ADTKD and congenital anemia accompanied by either intrauterine growth retardation or neutropenia. Ultrasound and kidney biopsy revealed small dysplastic kidneys with cysts and tubular atrophy with secondary glomerular sclerosis, respectively. Exclusion of known ADTKD genes coupled with linkage analysis, whole-exome sequencing, and targeted re-sequencing identified heterozygous missense variants in SEC61A1-c.553A>G (p.Thr185Ala) and c.200T>G (p.Val67Gly)-both affecting functionally important and conserved residues in SEC61. Both transiently expressed SEC6A1A variants are delocalized to the Golgi, a finding confirmed in a renal biopsy from an affected individual. Suppression or CRISPR-mediated deletions of sec61al2 in zebrafish embryos induced convolution defects of the pronephric tubules but not the pronephric ducts, consistent with the tubular atrophy observed in the affected individuals. Human mRNA encoding either of the two pathogenic alleles failed to rescue this phenotype as opposed to a complete rescue by human wild-type mRNA. Taken together, these findings provide a mechanism by which mutations in SEC61A1 lead to an autosomal-dominant syndromic form of progressive chronic kidney disease. We highlight protein translocation defects across the endoplasmic reticulum membrane, the principal role of the SEC61 complex, as a contributory pathogenic mechanism for ADTKD.

Indexed as

HeterozygoteMutationAdultAgedAllelesAmino Acid SequenceAnemiaAnimalsBiopsyChildChronic DiseaseDisease ProgressionEndoplasmic ReticulumExomeFemaleFetal Growth RetardationRNA, MessengerSEC61A1 protein, humanSEC Translocation Channels

Identifiers

PMID27392076
PMCPMC5005467
OpenAlexW2471427314

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.