ArticlePloS one2016
The Complete Chloroplast Genome of Ye-Xing-Ba (Scrophularia dentata; Scrophulariaceae), an Alpine Tibetan Herb.
Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed, 32 citations in OpenAlex.
- Complete chloroplast genome sequence and phylogenetic analysis of Symphytum officinale.Genetics and molecular biology · 2025Article
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- Comparative plastome analyses and evolutionary relationships of 25 East Asian species within the medicinal plant genusFrontiers in plant science · 2024Article
- Comparative genomics analysis of endangered wild EgyptianFrontiers in genetics · 2023Article
- The complete chloroplast genome sequences of six Hylotelephium species: Comparative genomic analysis and phylogenetic relationships.PloS one · 2023Article
- Phylogenomic analysis and development of molecular markers for the determination of twelve plum cultivars (Prunus, Rosaceae).BMC genomics · 2022Article
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- Comparative chloroplast genome analyses of cultivated spinach and two wild progenitors shed light on the phylogenetic relationships and variation.Scientific reports · 2022Article
- Green giant-a tiny chloroplast genome with mighty power to produce high-value proteins: history and phylogeny.Plant biotechnology journal · 2021Review
- Complete Chloroplast Genome Sequencing and Phylogenetic Analysis of TwoBioMed research international · 2020Article
- Scrodentoids H and I, a Pair of Natural Epimerides fromEvidence-based complementary and alternative medicine : eCAM · 2020Article
- Comparative analysis of the complete chloroplast genome amongHorticulture research · 2019Article
- The complete chloroplast genome sequences of four Viola species (Violaceae) and comparative analyses with its congeneric species.PloS one · 2019Article
- Characterization of the Complete Chloroplast Genomes ofMolecules (Basel, Switzerland) · 2018Article
- Characterization and Comparative Analysis of the Complete Chloroplast Genome of the Critically Endangered SpeciesBioMed research international · 2018Article
- The Complete Chloroplast Genome Sequences of the Medicinal Plant Forsythia suspensa (Oleaceae).International journal of molecular sciences · 2017Article
- Complete Chloroplast Genome Sequence of Decaisnea insignis: Genome Organization, Genomic Resources and Comparative Analysis.Scientific reports · 2017Article
- The Complete Chloroplast Genome Sequences of Fritillaria ussuriensis Maxim. and Fritillaria cirrhosa D. Don, and Comparative Analysis with Other Fritillaria Species.Molecules (Basel, Switzerland) · 2017Article
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Authors and funding
4 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Scrophularia dentata is an important Tibetan medicinal plant and traditionally used for the treatment of exanthema and fever in Traditional Tibetan Medicine (TTM). However, there is little sequence and genomic information available for S. dentata. In this paper, we report the complete chloroplast genome sequence of S. dentata and it is the first sequenced member of the Sect. Tomiophyllum within Scrophularia (Scrophulariaceae). The gene order and organization of the chloroplast genome of S. dentata are similar to other Lamiales chloroplast genomes. The plastome is 152,553 bp in length and includes a pair of inverted repeats (IRs) of 25,523 bp that separate a large single copy (LSC) region of 84,058 bp and a small single copy (SSC) region of 17,449 bp. It has 38.0% GC content and includes 114 unique genes, of which 80 are protein-coding, 30 are transfer RNA, and 4 are ribosomal RNA. Also, it contains 21 forward repeats, 19 palindrome repeats and 41 simple sequence repeats (SSRs). The repeats and SSRs within S. dentata were compared with those of S. takesimensis and present certain discrepancies. The chloroplast genome of S. dentata was compared with other five publicly available Lamiales genomes from different families. All the coding regions and non-coding regions (introns and intergenic spacers) within the six chloroplast genomes have been extracted and analysed. Furthermore, the genome divergent hotspot regions were identified. Our studies could provide basic data for the alpine medicinal species conservation and molecular phylogenetic researches of Scrophulariaceae and Lamiales.
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