Evidence map›Paper›PMID 27391081›Full record

ArticlePloS one2016

AvrRxo1 Is a Bifunctional Type III Secreted Effector and Toxin-Antitoxin System Component with Homologs in Diverse Environmental Contexts.

Lindsay R Triplett, Teja Shidore, John Long, Jiamin Miao, Shuchi Wu, Qian Han, Changhe Zhou, Hiromichi Ishihara, Jianyong Li, Bingyu Zhao and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
9.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 46 citations in OpenAlex.

  1. Pathogens (Basel, Switzerland) · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Analysis of the Type 4 Effectome across the GenusInternational journal of molecular sciences · 2022
    Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Natural Variation in Virulence ofThe plant pathology journal · 2020
    Article
  17. Article
  18. FilamentousFrontiers in microbiology · 2020
    Article
  19. Chromosomally EncodedApplied and environmental microbiology · 2019
    Article
  20. Rice Routes of CounteringInternational journal of molecular sciences · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Lindsay R TriplettDepartment of Plant Pathology and Ecology, The Connecticut Agricultural Experiment Station, New Haven, CT, United States of America.
Teja ShidoreDepartment of Plant Pathology and Ecology, The Connecticut Agricultural Experiment Station, New Haven, CT, United States of America.
John LongDepartment of Bioagricultural Sciences and Pest Management and Program in Plant Molecular Biology, Colorado State University, Fort Collins, CO, United States of America.
Jiamin MiaoDepartment of Horticulture, Virginia Polytechnic Institute and State University, Blacksburg, VA, United States of America.
Shuchi WuDepartment of Horticulture, Virginia Polytechnic Institute and State University, Blacksburg, VA, United States of America.
Qian HanDepartment of Biochemistry, Virginia Polytechnic Institute and State University, Blacksburg, VA, United States of America.
Changhe ZhouDepartment of Horticulture, Virginia Polytechnic Institute and State University, Blacksburg, VA, United States of America.
Hiromichi IshiharaDepartment of Bioagricultural Sciences and Pest Management and Program in Plant Molecular Biology, Colorado State University, Fort Collins, CO, United States of America.
Jianyong LiDepartment of Biochemistry, Virginia Polytechnic Institute and State University, Blacksburg, VA, United States of America.
Bingyu ZhaoDepartment of Horticulture, Virginia Polytechnic Institute and State University, Blacksburg, VA, United States of America.
Jan E LeachDepartment of Bioagricultural Sciences and Pest Management and Program in Plant Molecular Biology, Colorado State University, Fort Collins, CO, United States of America.
Virginia Tech · USColorado State University · USConnecticut Agricultural Experiment Station · USHainan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Toxin-antitoxin (TA) systems are ubiquitous bacterial systems that may function in genome maintenance and metabolic stress management, but are also thought to play a role in virulence by helping pathogens survive stress. We previously demonstrated that the Xanthomonas oryzae pv. oryzicola protein AvrRxo1 is a type III-secreted virulence factor that has structural similarities to the zeta family of TA toxins, and is toxic to plants and bacteria in the absence of its predicted chaperone Arc1. In this work, we confirm that AvrRxo1 and its binding partner Arc1 function as a TA system when expressed in Escherichia coli. Sequences of avrRxo1 homologs were culled from published and newly generated phytopathogen genomes, revealing that avrRxo1:arc1 modules are rare or frequently inactivated in some species and highly conserved in others. Cloning and functional analysis of avrRxo1 from Acidovorax avenae, A. citrulli, Burkholderia andropogonis, Xanthomonas translucens, and Xanthomonas euvesicatoria showed that some AvrRxo1 homologs share the bacteriostatic and Rxo1-mediated cell death triggering activities of AvrRxo1 from X. oryzae. Additional distant putative homologs of avrRxo1 and arc1 were identified in genomic or metagenomic sequence of environmental bacteria with no known pathogenic role. One of these distant homologs was cloned from the filamentous soil bacterium Cystobacter fuscus. avrRxo1 from C. fuscus caused watersoaking and triggered Rxo1-dependent cell collapse in Nicotiana benthamiana, but no growth suppression in E. coli was observed. This work confirms that a type III effector can function as a TA system toxin, and illustrates the potential of microbiome data to reveal new environmental origins or reservoirs of pathogen virulence factors.

Indexed as

Bacterial ProteinsBacterial Secretion SystemsEscherichia coliNicotianaPlant DiseasesXanthomonasBacterial ProteinsBacterial Secretion Systems

Identifiers

PMID27391081
PMCPMC4938570
OpenAlexW2472284187

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.