Evidence map›Paper›PMID 27390838›Full record

ArticleBMC neuroscience2015

Characterization of a novel zebrafish (Danio rerio) gene, wdr81, associated with cerebellar ataxia, mental retardation and dysequilibrium syndrome (CAMRQ).

Fusun Doldur-Balli, Mehmet Neset Ozel, Suleyman Gulsuner, Ayse B Tekinay, Tayfun Ozcelik, Ozlen Konu, Michelle M Adams

Open access · goldAbstract read
In one paragraph

Article in BMC neuroscience, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact, top 93% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Fusun Doldur-BalliDepartment of Molecular Biology and Genetics, Bilkent University, Ankara, Turkey.
Mehmet Neset OzelDepartment of Molecular Biology and Genetics, Bilkent University, Ankara, Turkey.
Suleyman GulsunerDepartment of Molecular Biology and Genetics, Bilkent University, Ankara, Turkey.
Ayse B TekinayUNAM-Institute of Materials Science and Nanotechnology, Bilkent University, Ankara, Turkey.
Tayfun OzcelikDepartment of Molecular Biology and Genetics, Bilkent University, Ankara, Turkey.
Ozlen KonuDepartment of Molecular Biology and Genetics, Bilkent University, Ankara, Turkey.
Michelle M AdamsUNAM-Institute of Materials Science and Nanotechnology, Bilkent University, Ankara, Turkey. michelle@bilkent.edu.tr.
Bilkent University · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundWDR81 (WD repeat-containing protein 81) is associated with cerebellar ataxia, mental retardation and disequilibrium syndrome (CAMRQ2, [MIM 610185]). Human and mouse studies suggest that it might be a gene of importance during neurodevelopment. This study aimed at fully characterizing the structure of the wdr81 transcript, detecting the possible transcript variants and revealing its expression profile in zebrafish, a powerful model organism for studying development and disease.

resultsAs expected in human and mouse orthologous proteins, zebrafish wdr81 is predicted to possess a BEACH (Beige and Chediak-Higashi) domain, a major facilitator superfamily domain and WD40-repeats, which indicates a conserved function in these species. We observed that zebrafish wdr81 encodes one open reading frame while the transcript has one 5' untranslated region (UTR) and the prediction of the 3' UTR was mainly confirmed along with a detected insertion site in the embryo and adult brain. This insertion site was also found in testis, heart, liver, eye, tail and muscle, however, there was no amplicon in kidney, intestine and gills, which might be the result of possible alternative polyadenylation processes among tissues. The 5 and 18 hpf were critical timepoints of development regarding wdr81 expression. Furthermore, the signal of the RNA probe was stronger in the eye and brain at 18 and 48 hpf, then decreased at 72 hpf. Finally, expression of wdr81 was detected in the adult brain and eye tissues, including but not restricted to photoreceptors of the retina, presumptive Purkinje cells and some neurogenic brains regions.

conclusionsTaken together these data emphasize the importance of this gene during neurodevelopment and a possible role for neuronal proliferation. Our data provide a basis for further studies to fully understand the function of wdr81.

Indexed as

AnimalsBrainCerebellar AtaxiaComputational BiologyEyeGene ExpressionGene Expression Regulation, DevelopmentalIn Situ HybridizationIntellectual DisabilityPolyadenylationReal-Time Polymerase Chain ReactionZebrafishZebrafish ProteinsWDR81 protein, zebrafishZebrafish ProteinsIn situ hybridizationqRT-PCRRACEwdr81Zebrafish

Identifiers

PMID27390838
PMCPMC4690267
OpenAlexW2215861885

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.