Evidence map›Paper›PMID 27388680›Full record

ArticlePlant physiology2016

eIF4A RNA Helicase Associates with Cyclin-Dependent Protein Kinase A in Proliferating Cells and Is Modulated by Phosphorylation.

Maxwell S Bush, Olivier Pierrat, Candida Nibau, Veronika Mikitova, Tao Zheng, Fiona M K Corke, Konstantinos Vlachonasios, Laura K Mayberry, Karen S Browning, John H Doonan

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 30 citations in OpenAlex.

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  9. Article
  10. Phosphorylation Site Motifs in Plant Protein Kinases and Their Substrates.Methods in molecular biology (Clifton, N.J.) · 2021
    Review
  11. Translational gene regulation in plants: A green new deal.Wiley interdisciplinary reviews. RNA · 2020
    Review
  12. Review
  13. Article
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  16. Review
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 4 countries.

Maxwell S BushDepartment of Cell and Developmental Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom (M.S.B., O.P., V.M.);Institute of Biological, Environmental, and Rural Sciences, Aberystwyth University, Gogerddan Campus, Aberystwyth SY23 3EE, United Kingdom (C.N., F.M.K.C., K.V., J.H.D.);Institute of Virology and Biotechnology, Zhejiang Academy of Agricultural Science, Hangzhou City, Zhejiang Province 310021, China (T.Z.);Aristotle University of Thessaloniki, Faculty of Science, School of Biology, Department of Botany, 54124 Thessaloniki, Greece (K.V.); andDepartment of Molecular Biosciences and Institute for Cell and Molecular Biology, University of Texas, Austin, Texas 78712 (L.K.M., K.S.B.).
Olivier PierratDepartment of Cell and Developmental Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom (M.S.B., O.P., V.M.);Institute of Biological, Environmental, and Rural Sciences, Aberystwyth University, Gogerddan Campus, Aberystwyth SY23 3EE, United Kingdom (C.N., F.M.K.C., K.V., J.H.D.);Institute of Virology and Biotechnology, Zhejiang Academy of Agricultural Science, Hangzhou City, Zhejiang Province 310021, China (T.Z.);Aristotle University of Thessaloniki, Faculty of Science, School of Biology, Department of Botany, 54124 Thessaloniki, Greece (K.V.); andDepartment of Molecular Biosciences and Institute for Cell and Molecular Biology, University of Texas, Austin, Texas 78712 (L.K.M., K.S.B.).
Candida NibauDepartment of Cell and Developmental Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom (M.S.B., O.P., V.M.);Institute of Biological, Environmental, and Rural Sciences, Aberystwyth University, Gogerddan Campus, Aberystwyth SY23 3EE, United Kingdom (C.N., F.M.K.C., K.V., J.H.D.);Institute of Virology and Biotechnology, Zhejiang Academy of Agricultural Science, Hangzhou City, Zhejiang Province 310021, China (T.Z.);Aristotle University of Thessaloniki, Faculty of Science, School of Biology, Department of Botany, 54124 Thessaloniki, Greece (K.V.); andDepartment of Molecular Biosciences and Institute for Cell and Molecular Biology, University of Texas, Austin, Texas 78712 (L.K.M., K.S.B.).
Veronika MikitovaDepartment of Cell and Developmental Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom (M.S.B., O.P., V.M.);Institute of Biological, Environmental, and Rural Sciences, Aberystwyth University, Gogerddan Campus, Aberystwyth SY23 3EE, United Kingdom (C.N., F.M.K.C., K.V., J.H.D.);Institute of Virology and Biotechnology, Zhejiang Academy of Agricultural Science, Hangzhou City, Zhejiang Province 310021, China (T.Z.);Aristotle University of Thessaloniki, Faculty of Science, School of Biology, Department of Botany, 54124 Thessaloniki, Greece (K.V.); andDepartment of Molecular Biosciences and Institute for Cell and Molecular Biology, University of Texas, Austin, Texas 78712 (L.K.M., K.S.B.).
Tao ZhengDepartment of Cell and Developmental Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom (M.S.B., O.P., V.M.);Institute of Biological, Environmental, and Rural Sciences, Aberystwyth University, Gogerddan Campus, Aberystwyth SY23 3EE, United Kingdom (C.N., F.M.K.C., K.V., J.H.D.);Institute of Virology and Biotechnology, Zhejiang Academy of Agricultural Science, Hangzhou City, Zhejiang Province 310021, China (T.Z.);Aristotle University of Thessaloniki, Faculty of Science, School of Biology, Department of Botany, 54124 Thessaloniki, Greece (K.V.); andDepartment of Molecular Biosciences and Institute for Cell and Molecular Biology, University of Texas, Austin, Texas 78712 (L.K.M., K.S.B.).
Fiona M K CorkeDepartment of Cell and Developmental Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom (M.S.B., O.P., V.M.);Institute of Biological, Environmental, and Rural Sciences, Aberystwyth University, Gogerddan Campus, Aberystwyth SY23 3EE, United Kingdom (C.N., F.M.K.C., K.V., J.H.D.);Institute of Virology and Biotechnology, Zhejiang Academy of Agricultural Science, Hangzhou City, Zhejiang Province 310021, China (T.Z.);Aristotle University of Thessaloniki, Faculty of Science, School of Biology, Department of Botany, 54124 Thessaloniki, Greece (K.V.); andDepartment of Molecular Biosciences and Institute for Cell and Molecular Biology, University of Texas, Austin, Texas 78712 (L.K.M., K.S.B.).
Konstantinos VlachonasiosDepartment of Cell and Developmental Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom (M.S.B., O.P., V.M.);Institute of Biological, Environmental, and Rural Sciences, Aberystwyth University, Gogerddan Campus, Aberystwyth SY23 3EE, United Kingdom (C.N., F.M.K.C., K.V., J.H.D.);Institute of Virology and Biotechnology, Zhejiang Academy of Agricultural Science, Hangzhou City, Zhejiang Province 310021, China (T.Z.);Aristotle University of Thessaloniki, Faculty of Science, School of Biology, Department of Botany, 54124 Thessaloniki, Greece (K.V.); andDepartment of Molecular Biosciences and Institute for Cell and Molecular Biology, University of Texas, Austin, Texas 78712 (L.K.M., K.S.B.).ORCID 0000-0003-1755-1645
Laura K MayberryDepartment of Cell and Developmental Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom (M.S.B., O.P., V.M.);Institute of Biological, Environmental, and Rural Sciences, Aberystwyth University, Gogerddan Campus, Aberystwyth SY23 3EE, United Kingdom (C.N., F.M.K.C., K.V., J.H.D.);Institute of Virology and Biotechnology, Zhejiang Academy of Agricultural Science, Hangzhou City, Zhejiang Province 310021, China (T.Z.);Aristotle University of Thessaloniki, Faculty of Science, School of Biology, Department of Botany, 54124 Thessaloniki, Greece (K.V.); andDepartment of Molecular Biosciences and Institute for Cell and Molecular Biology, University of Texas, Austin, Texas 78712 (L.K.M., K.S.B.).
Karen S BrowningDepartment of Cell and Developmental Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom (M.S.B., O.P., V.M.);Institute of Biological, Environmental, and Rural Sciences, Aberystwyth University, Gogerddan Campus, Aberystwyth SY23 3EE, United Kingdom (C.N., F.M.K.C., K.V., J.H.D.);Institute of Virology and Biotechnology, Zhejiang Academy of Agricultural Science, Hangzhou City, Zhejiang Province 310021, China (T.Z.);Aristotle University of Thessaloniki, Faculty of Science, School of Biology, Department of Botany, 54124 Thessaloniki, Greece (K.V.); andDepartment of Molecular Biosciences and Institute for Cell and Molecular Biology, University of Texas, Austin, Texas 78712 (L.K.M., K.S.B.) kbrowning@cm.utexas.edu john.doonan@aber.ac.uk.
John H DoonanDepartment of Cell and Developmental Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom (M.S.B., O.P., V.M.);Institute of Biological, Environmental, and Rural Sciences, Aberystwyth University, Gogerddan Campus, Aberystwyth SY23 3EE, United Kingdom (C.N., F.M.K.C., K.V., J.H.D.);Institute of Virology and Biotechnology, Zhejiang Academy of Agricultural Science, Hangzhou City, Zhejiang Province 310021, China (T.Z.);Aristotle University of Thessaloniki, Faculty of Science, School of Biology, Department of Botany, 54124 Thessaloniki, Greece (K.V.); andDepartment of Molecular Biosciences and Institute for Cell and Molecular Biology, University of Texas, Austin, Texas 78712 (L.K.M., K.S.B.) kbrowning@cm.utexas.edu john.doonan@aber.ac.uk.ORCID 0000-0001-6027-1919
Aberystwyth University · GBJohn Innes Centre · GB

Funding

Biotechnology and Biological Sciences Research Council BB/C507988/1
6 · The paper itself

Abstract

Eukaryotic initiation factor 4A (eIF4A) is a highly conserved RNA-stimulated ATPase and helicase involved in the initiation of messenger RNA translation. Previously, we found that eIF4A interacts with cyclin-dependent kinase A (CDKA), the plant ortholog of mammalian CDK1. Here, we show that this interaction occurs only in proliferating cells where the two proteins coassociate with 5'-cap-binding protein complexes, eIF4F or the plant-specific eIFiso4F. CDKA phosphorylates eIF4A on a conserved threonine residue (threonine-164) within the RNA-binding motif 1b TPGR. In vivo, a phospho-null (APGR) variant of the Arabidopsis (Arabidopsis thaliana) eIF4A1 protein retains the ability to functionally complement a mutant (eif4a1) plant line lacking eIF4A1, whereas a phosphomimetic (EPGR) variant fails to complement. The phospho-null variant (APGR) rescues the slow growth rate of roots and rosettes, together with the ovule-abortion and late-flowering phenotypes. In vitro, wild-type recombinant eIF4A1 and its phospho-null variant both support translation in cell-free wheat germ extracts dependent upon eIF4A, but the phosphomimetic variant does not support translation and also was deficient in ATP hydrolysis and helicase activity. These observations suggest a mechanism whereby CDK phosphorylation has the potential to down-regulate eIF4A activity and thereby affect translation.

Indexed as

ArabidopsisArabidopsis ProteinsBinding SitesCell LineCell ProliferationCyclin-Dependent KinasesEukaryotic Initiation Factor-4AGene Expression Regulation, EnzymologicGene Expression Regulation, PlantMutationOvulePhosphorylationPlant RootsPlants, Genetically ModifiedProtein BindingReverse Transcriptase Polymerase Chain ReactionArabidopsis ProteinsCyclin-Dependent KinasesEukaryotic Initiation Factor-4ARNA HelicasesThreonine

Identifiers

PMID27388680
PMCPMC5074640
OpenAlexW2468838547

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.