Evidence map›Paper›PMID 27387499›Full record

ArticleThe Journal of biological chemistry2016

Protein Arginine Methyltransferase Product Specificity Is Mediated by Distinct Active-site Architectures.

Kanishk Jain, Rebeccah A Warmack, Erik W Debler, Andrea Hadjikyriacou, Peter Stavropoulos, Steven G Clarke

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 46 citations in OpenAlex.

  1. Review
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  4. Review
  5. Review
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  7. Article
  8. Article
  9. Protein arginine methylation in viral infection and antiviral immunity.International journal of biological sciences · 2023
    Review
  10. Article
  11. Review
  12. Article
  13. Structure, Activity, and Function of PRMT1.Life (Basel, Switzerland) · 2021
    Review
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Kanishk JainFrom the Department of Chemistry and Biochemistry and the Molecular Biology Institute, UCLA, Los Angeles, California 90095 and.
Rebeccah A WarmackFrom the Department of Chemistry and Biochemistry and the Molecular Biology Institute, UCLA, Los Angeles, California 90095 and.
Erik W Deblerthe Laboratory of Cell Biology and.ORCID 0000-0002-2587-2150
Andrea HadjikyriacouFrom the Department of Chemistry and Biochemistry and the Molecular Biology Institute, UCLA, Los Angeles, California 90095 and.ORCID 0000-0002-3420-367X
Peter Stavropoulosthe Laboratory of Cell Biology and Laboratory of Lymphocyte Biology, The Rockefeller University, New York, New York 10065.
Steven G ClarkeFrom the Department of Chemistry and Biochemistry and the Molecular Biology Institute, UCLA, Los Angeles, California 90095 and clarke@mbi.ucla.edu.ORCID 0000-0002-7303-6632
University of California, Los Angeles · USInstitute of Cell Biology · UAState Key Laboratory of Cell BiologyUCLA Medical Center · US

Funding

UCLA NIGMS T32 Program AssessmentT32GM007185 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI TORRES, JORGE · 1985 to 2020
$21.7M
CONTROL OF EUCARYOTIC FUNCTION BY METHYLATIONR37GM026020 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CLARKE, STEVEN G · 2000 to 2009
$5.0M
CONTROL OF EUKARYOTIC MEMBRANE FUNCTION BY METHYLATIONR01GM026020 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CLARKE, STEVEN G · 1985 to 2013
$2.1M
NIGMS NIH HHS R01 GM026020NIGMS NIH HHS R37 GM026020NIGMS NIH HHS T32 GM007185
6 · The paper itself

Abstract

In the family of protein arginine methyltransferases (PRMTs) that predominantly generate either asymmetric or symmetric dimethylarginine (SDMA), PRMT7 is unique in producing solely monomethylarginine (MMA) products. The type of methylation on histones and other proteins dictates changes in gene expression, and numerous studies have linked altered profiles of methyl marks with disease phenotypes. Given the importance of specific inhibitor development, it is crucial to understand the mechanisms by which PRMT product specificity is conferred. We have focused our attention on active-site residues of PRMT7 from the protozoan Trypanosoma brucei We have designed 26 single and double mutations in the active site, including residues in the Glu-Xaa8-Glu (double E) loop and the Met-Gln-Trp sequence of the canonical Thr-His-Trp (THW) loop known to interact with the methyl-accepting substrate arginine. Analysis of the reaction products by high resolution cation exchange chromatography combined with the knowledge of PRMT crystal structures suggests a model where the size of two distinct subregions in the active site determines PRMT7 product specificity. A dual mutation of Glu-181 to Asp in the double E loop and Gln-329 to Ala in the canonical THW loop enables the enzyme to produce SDMA. Consistent with our model, the mutation of Cys-431 to His in the THW loop of human PRMT9 shifts its product specificity from SDMA toward MMA. Together with previous results, these findings provide a structural basis and a general model for product specificity in PRMTs, which will be useful for the rational design of specific PRMT inhibitors.

Indexed as

Amino Acid SubstitutionArginineCatalytic DomainHumansMutation, MissenseProtein-Arginine N-MethyltransferasesProtein Structure, SecondaryProtozoan ProteinsSubstrate SpecificityTrypanosoma brucei bruceiArginineProtein-Arginine N-MethyltransferasesProtozoan Proteinsenzyme catalysisepigeneticshistone methylationmethyltransferasepost-translational modification (PTM)PRMTPRMT product specificityprotein arginine methylationprotein methylation

Identifiers

PMID27387499
PMCPMC5000077
OpenAlexW2460501420

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.