Evidence map›Paper›PMID 27387481›Full record

ArticleEndocrinology2016

Liganded Thyroid Hormone Receptors Transactivate the DNA Methyltransferase 3a Gene in Mouse Neuronal Cells.

Yasuhiro Kyono, Arasakumar Subramani, Preeti Ramadoss, Anthony N Hollenberg, Ronald M Bonett, Robert J Denver

Open access · bronzeAbstract read
In one paragraph

Article in Endocrinology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
  2. ExploringReports of biochemistry & molecular biology · 2025
    Article
  3. Article
  4. Thyroid hormone links environmental signals to DNA methylation.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
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  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Cognition-Enhancing Vagus Nerve Stimulation Alters the Epigenetic Landscape.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2019
    Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Yasuhiro KyonoNeuroscience Graduate Program (Y.K., R.J.D.) and Department of Molecular, Cellular and Developmental Biology (A.S., R.J.D.), The University of Michigan, Ann Arbor, Michigan 48109; Division of Endocrinology, Diabetes and Metabolism (P.R., A.N.H.), Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, Massachusetts 02115; and Department of Biological Science (R.M.B.), The University of Tulsa, Tulsa, Oklahoma 74104.
Arasakumar SubramaniNeuroscience Graduate Program (Y.K., R.J.D.) and Department of Molecular, Cellular and Developmental Biology (A.S., R.J.D.), The University of Michigan, Ann Arbor, Michigan 48109; Division of Endocrinology, Diabetes and Metabolism (P.R., A.N.H.), Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, Massachusetts 02115; and Department of Biological Science (R.M.B.), The University of Tulsa, Tulsa, Oklahoma 74104.
Preeti RamadossNeuroscience Graduate Program (Y.K., R.J.D.) and Department of Molecular, Cellular and Developmental Biology (A.S., R.J.D.), The University of Michigan, Ann Arbor, Michigan 48109; Division of Endocrinology, Diabetes and Metabolism (P.R., A.N.H.), Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, Massachusetts 02115; and Department of Biological Science (R.M.B.), The University of Tulsa, Tulsa, Oklahoma 74104.
Anthony N HollenbergNeuroscience Graduate Program (Y.K., R.J.D.) and Department of Molecular, Cellular and Developmental Biology (A.S., R.J.D.), The University of Michigan, Ann Arbor, Michigan 48109; Division of Endocrinology, Diabetes and Metabolism (P.R., A.N.H.), Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, Massachusetts 02115; and Department of Biological Science (R.M.B.), The University of Tulsa, Tulsa, Oklahoma 74104.
Ronald M BonettNeuroscience Graduate Program (Y.K., R.J.D.) and Department of Molecular, Cellular and Developmental Biology (A.S., R.J.D.), The University of Michigan, Ann Arbor, Michigan 48109; Division of Endocrinology, Diabetes and Metabolism (P.R., A.N.H.), Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, Massachusetts 02115; and Department of Biological Science (R.M.B.), The University of Tulsa, Tulsa, Oklahoma 74104.
Robert J DenverNeuroscience Graduate Program (Y.K., R.J.D.) and Department of Molecular, Cellular and Developmental Biology (A.S., R.J.D.), The University of Michigan, Ann Arbor, Michigan 48109; Division of Endocrinology, Diabetes and Metabolism (P.R., A.N.H.), Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, Massachusetts 02115; and Department of Biological Science (R.M.B.), The University of Tulsa, Tulsa, Oklahoma 74104.
University of Michigan–Ann Arbor · USHarvard University · USUniversity of Tulsa · US

Funding

PUBLIC HEALTH DEMONSTRATIONP60DK020572 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MYERS, MARTIN G · 1985 to 2012
$26.5M
Regional Pilot And Feasibility Study Grants ProgramP30DK020572 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Mehboob A Hussain · 2013 to 2026
$24.3M
COREPRESSOR REGULATION OF THYROID HORMONE ACTIONR01DK056123 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI HOLLENBERG, ANTHONY N · 2000 to 2023
$7.6M
Early Stage Training in the NeurosciencesT32NS076401 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Carol Fuzeti Elias, LESLIE S. SATIN · 2011 to 2026
$3.1M
Defining the thyroid hormone receptor Cistrome in vivoR21DK091941 · NIDDK · BETH ISRAEL DEACONESS MEDICAL CENTER · PI HOLLENBERG, ANTHONY N · 2011 to 2012
$479k
Thyroid hormone regulates DNA methylation in the developing brain through direct modulation of the DNA methyltransferase 3a geneR21NS088062 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DENVER, ROBERT J · 2015 to 2016
$412k
NIDDK NIH HHS P30 DK020572NIDDK NIH HHS P60 DK020572NIDDK NIH HHS R01 DK056123NIDDK NIH HHS R21 DK091941NINDS NIH HHS R21 NS088062NINDS NIH HHS T32 NS076401
6 · The paper itself

Abstract

Thyroid hormone (T3) is essential for proper neurological development. The hormone, bound to its receptors, regulates gene transcription in part by modulating posttranslational modifications of histones. Methylation of DNA, which is established by the de novo DNA methyltransferase (DNMT)3a and DNMT3b, and maintained by DNMT1 is another epigenetic modification influencing gene transcription. The expression of Dnmt3a, but not other Dnmt genes, increases in mouse brain in parallel with the postnatal rise in plasma [T3]. We found that treatment of the mouse neuroblastoma cell line Neuro2a[TRβ1] with T3 caused rapid induction of Dnmt3a mRNA, which was resistant to protein synthesis inhibition, supporting that it is a direct T3-response gene. Injection of T3 into postnatal day 6 mice increased Dnmt3a mRNA in the brain by 1 hour. Analysis of two chromatin immunoprecipitation-sequencing datasets, and targeted analyses using chromatin immunoprecipitation, transfection-reporter assays, and in vitro DNA binding identified 2 functional T3-response elements (TREs) at the mouse Dnmt3a locus located +30.3 and +49.3 kb from the transcription start site. Thyroid hormone receptors associated with both of these regions in mouse brain chromatin, but with only 1 (+30.3 kb) in Neuro2a[TRβ1] cells. Deletion of the +30.3-kb TRE using CRISPR/Cas9 genome editing eliminated or strongly reduced the Dnmt3a mRNA response to T3. Bioinformatics analysis showed that both TREs are highly conserved among eutherian mammals. Thyroid regulation of Dnmt3a may be an evolutionarily conserved mechanism for modulating global changes in DNA methylation during postnatal neurological development.

Indexed as

AnimalsAnimals, NewbornBase SequenceBrainCell Line, TumorClustered Regularly Interspaced Short Palindromic RepeatsConserved SequenceDNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3AMice, Inbred C57BLMolecular Sequence DataReceptors, Thyroid HormoneResponse ElementsTranscriptional ActivationTriiodothyronineDNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3ADnmt3a protein, mouseReceptors, Thyroid HormoneTriiodothyronine

Identifiers

PMID27387481
PMCPMC5007891
OpenAlexW2475331585

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.