Evidence map›Paper›PMID 27387170›Full record

ArticlePharmaceutical research2016

Exploring Variation in Known Pharmacogenetic Variants and its Association with Drug Response in Different Mexican Populations.

Vanessa Gonzalez-Covarrubias, José Jaime Martínez-Magaña, Regina Coronado-Sosa, Beatriz Villegas-Torres, Alma D Genis-Mendoza, Pablo Canales-Herrerias, Humberto Nicolini, Xavier Soberón

Abstract read
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In one paragraph

Article in Pharmaceutical research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Vanessa Gonzalez-CovarrubiasLaboratorio de Farmacogenómica, Instituto Nacional de Medicina Genómica (INMEGEN), Ciudad de Mexico, Mexico. vgonzalez@inmegen.gob.mx.ORCID 0000-0003-2072-2847
José Jaime Martínez-MagañaLaboratorio de Genomica de Enfermedades Psiquiatricas y Neurodegenerativas, Instituto Nacional de Medicina Genomica (INMEGEN), Ciudad de Mexico, Mexico.
Regina Coronado-SosaLaboratorio de Farmacogenómica, Instituto Nacional de Medicina Genómica (INMEGEN), Ciudad de Mexico, Mexico.
Beatriz Villegas-TorresLaboratorio de Diagnostico Genomico, Instituto Nacional de Medicina Genómica (INMEGEN), Ciudad de Mexico, Mexico.
Alma D Genis-MendozaLaboratorio de Genomica de Enfermedades Psiquiatricas y Neurodegenerativas, Instituto Nacional de Medicina Genomica (INMEGEN), Ciudad de Mexico, Mexico.
Pablo Canales-HerreriasLaboratorio de Farmacogenómica, Instituto Nacional de Medicina Genómica (INMEGEN), Ciudad de Mexico, Mexico.
Humberto NicoliniLaboratorio de Genomica de Enfermedades Psiquiatricas y Neurodegenerativas, Instituto Nacional de Medicina Genomica (INMEGEN), Ciudad de Mexico, Mexico.
Xavier SoberónLaboratorio de Farmacogenómica, Instituto Nacional de Medicina Genómica (INMEGEN), Ciudad de Mexico, Mexico.
National Institute of Genomic Medicine · MXSecretaria de Salud · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeInformation on genetic variants that affect the pharmacokinetics and pharmacodynamics (PK/PD) of drugs in different populations from Mexico is still an ongoing endeavor. Here, we investigate allele frequencies on pharmacogenetic targets in Mexican Mestizos and Natives from three different States and its association with drug efficacy in individuals receiving either anticoagulants or antipsychotic drugs.

methodsNatives from three different states and Mestizo patients receiving acenocoumarol or antipsychotics were genotyped using the DMET microarray (Affymetrix).

resultsWe provide a collection of genetic variants that indicate that there are 3-times more variation than similarities between populations from Mexico and major continental groups. These differences were observed in several relevant targets including ABCB1, SLCO1A1, NAT2, UGTs, TYMS, VKORC1, and NR1I3. Moreover, Mexican Mestizos also showed allele frequency differences when compared to Natives for variants on DPYD, ADH1A, CYP3A4, SLC28A3, and SLC28A1. Significant allele differences also arose among the three Native groups here studied, mostly for transporters of the ABC-binding cassette and the solute carrier gene family. Finally, we explored genotype-drug response associations and pinpointed variants on FMOs (coumarins), and GSTM1 (haloperidol).

conclusionsThese findings confirm previous results and further delve into the pharmacogenetics of Mexican populations including different Native groups.

Indexed as

Pharmacogenomic VariantsAcenocoumarolAdolescentAdultAgedAged, 80 and overAnticoagulantsAntipsychotic AgentsConstitutive Androstane ReceptorFemaleGene FrequencyGenetics, PopulationGenotypeHumansIndians, North AmericanMaleAcenocoumarolAnticoagulantsAntipsychotic AgentsConstitutive Androstane ReceptorNR1I3 protein, humanantipsychoticscoumarinsMexican populationspharmacogenetics

Identifiers

PMID27387170
OpenAlexW2474197479

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.