Evidence map›Paper›PMID 27387148›Full record

ArticleNature communications2016

A heavy metal P-type ATPase OsHMA4 prevents copper accumulation in rice grain.

Xin-Yuan Huang, Fenglin Deng, Naoki Yamaji, Shannon R M Pinson, Miho Fujii-Kashino, John Danku, Alex Douglas, Mary Lou Guerinot, David E Salt, Jian Feng Ma

Abstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed.

  1. Food chemistry. Molecular sciences · 2026
    Article
  2. Article
  3. A broad-spectrum inhibitor of copper-exporting PProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Review
  5. Article
  6. A First-In-Class Broad Spectrum Inhibitor of Copper Exporting PbioRxiv : the preprint server for biology · 2026
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Rice Adaptation to Abiotic Stresses Caused by Soil Inorganic Elements.International journal of molecular sciences · 2025
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article

13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Xin-Yuan HuangInstitute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen AB24 3UU, UK.
Fenglin DengInstitute of Plant Science and Resources, Okayama University, Kurashiki 710-0046, Japan.ORCID 0000-0002-2577-9001
Naoki YamajiInstitute of Plant Science and Resources, Okayama University, Kurashiki 710-0046, Japan.
Shannon R M PinsonUSDA-ARS Dale Bumpers National Rice Research Center, Stuttgart, Arkansas 72160, USA.
Miho Fujii-KashinoInstitute of Plant Science and Resources, Okayama University, Kurashiki 710-0046, Japan.
John DankuInstitute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen AB24 3UU, UK.ORCID 0000-0002-5103-3852
Alex DouglasInstitute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen AB24 3UU, UK.
Mary Lou GuerinotDepartment of Biological Sciences, Dartmouth College, Hanover, New Hampshire 03755, USA.
David E SaltInstitute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen AB24 3UU, UK.
Jian Feng MaInstitute of Plant Science and Resources, Okayama University, Kurashiki 710-0046, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rice is a major source of calories and mineral nutrients for over half the world's human population. However, little is known in rice about the genetic basis of variation in accumulation of copper (Cu), an essential but potentially toxic nutrient. Here we identify OsHMA4 as the likely causal gene of a quantitative trait locus controlling Cu accumulation in rice grain. We provide evidence that OsHMA4 functions to sequester Cu into root vacuoles, limiting Cu accumulation in the grain. The difference in grain Cu accumulation is most likely attributed to a single amino acid substitution that leads to different OsHMA4 transport activity. The allele associated with low grain Cu was found in 67 of the 1,367 rice accessions investigated. Identification of natural allelic variation in OsHMA4 may facilitate the development of rice varieties with grain Cu concentrations tuned to both the concentration of Cu in the soil and dietary needs.

Indexed as

CopperEdible GrainOryzaPlant ProteinsPlant RootsP-type ATPasesQuantitative Trait LociSoilSoil PollutantsCopperPlant ProteinsP-type ATPasesSoilSoil Pollutants

Identifiers

PMID27387148
PMCPMC4941113

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.