Evidence map›Paper›PMID 27386920›Full record

ArticleScience (New York, N.Y.)2016

Early-life nutrition modulates the epigenetic state of specific rDNA genetic variants in mice.

Michelle L Holland, Robert Lowe, Paul W Caton, Carolina Gemma, Guillermo Carbajosa, Amy F Danson, Asha A M Carpenter, Elena Loche, Susan E Ozanne, Vardhman K Rakyan

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. How Early-Life Programming During Embryogenesis Imprints Cellular Memory.International journal of molecular sciences · 2025
    Review
  6. Review
  7. Characteristic analysis of NBMC genomics · 2025
    Article
  8. Article
  9. Assessing Human Ribosomal DNA Variation and Its Association With Phenotypic Outcomes.BioEssays : news and reviews in molecular, cellular and developmental biology · 2025
    Review
  10. Variant ribosomal DNA is essential for female differentiation in zebrafish.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Article
  11. Ribosome-associated proteins: unwRAPping ribosome heterogeneity in the twenty-first century.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
  12. Review
  13. Article
  14. Epigenetics and environmental health.Frontiers of medicine · 2024
    Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Under the magnifying glass: The ups and downs of rDNA copy number.Seminars in cell & developmental biology · 2023
    Review

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Michelle L HollandThe Blizard Institute, Barts, and The London School of Medicine and Dentistry, Queen Mary University of London, London E1 2AT, UK. m.holland@qmul.ac.uk v.rakyan@qmul.ac.uk.
Robert LoweThe Blizard Institute, Barts, and The London School of Medicine and Dentistry, Queen Mary University of London, London E1 2AT, UK.
Paul W CatonDivision of Diabetes and Nutritional Sciences, King's College London, 150 Stamford Street, London SE1 9NH, UK.
Carolina GemmaThe Blizard Institute, Barts, and The London School of Medicine and Dentistry, Queen Mary University of London, London E1 2AT, UK.
Guillermo CarbajosaThe Blizard Institute, Barts, and The London School of Medicine and Dentistry, Queen Mary University of London, London E1 2AT, UK.
Amy F DansonThe Blizard Institute, Barts, and The London School of Medicine and Dentistry, Queen Mary University of London, London E1 2AT, UK.
Asha A M CarpenterUniversity of Cambridge Metabolic Research Laboratories and MRC Metabolic Diseases Unit, Institute of Metabolic Science, Addenbrookes Hospital, Cambridge, CB2 0QQ, UK.
Elena LocheUniversity of Cambridge Metabolic Research Laboratories and MRC Metabolic Diseases Unit, Institute of Metabolic Science, Addenbrookes Hospital, Cambridge, CB2 0QQ, UK.
Susan E OzanneUniversity of Cambridge Metabolic Research Laboratories and MRC Metabolic Diseases Unit, Institute of Metabolic Science, Addenbrookes Hospital, Cambridge, CB2 0QQ, UK.
Vardhman K RakyanThe Blizard Institute, Barts, and The London School of Medicine and Dentistry, Queen Mary University of London, London E1 2AT, UK. m.holland@qmul.ac.uk v.rakyan@qmul.ac.uk.

Funding

Biotechnology and Biological Sciences Research Council BB/G00711/X/1Biotechnology and Biological Sciences Research Council BB/G00711X/1Biotechnology and Biological Sciences Research Council BB/M012494/1British Heart Foundation FS/09/029/27902British Heart Foundation FS/12/64/30001Medical Research Council MC_UU_12012/4
6 · The paper itself

Abstract

A suboptimal early-life environment, due to poor nutrition or stress during pregnancy, can influence lifelong phenotypes in the progeny. Epigenetic factors are thought to be key mediators of these effects. We show that protein restriction in mice from conception until weaning induces a linear correlation between growth restriction and DNA methylation at ribosomal DNA (rDNA). This epigenetic response remains into adulthood and is restricted to rDNA copies associated with a specific genetic variant within the promoter. Related effects are also found in models of maternal high-fat or obesogenic diets. Our work identifies environmentally induced epigenetic dynamics that are dependent on underlying genetic variation and establishes rDNA as a genomic target of nutritional insults.

Indexed as

Epigenesis, GeneticGene-Environment InteractionMaternal Nutritional Physiological PhenomenaNutritional StatusAnimalsDiet, High-FatDiet, Protein-RestrictedDNA MethylationDNA, RibosomalFemaleGenetic VariationMaleMiceObesityPregnancyPromoter Regions, GeneticDNA, Ribosomal

Identifiers

PMID27386920
PMCPMC5734613

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.