Evidence map›Paper›PMID 27386606›Full record

ArticleGenome biology and evolution2016

Genomic Plasticity of Multidrug-Resistant NDM-1 Positive Clinical Isolate of Providencia rettgeri.

Abiola Olumuyiwa Olaitan, Seydina M Diene, Marc Victor Assous, Jean-Marc Rolain

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.2field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Emergence of multidrug-resistantOne health (Amsterdam, Netherlands) · 2024
    Article
  4. Article
  5. An outbreak ofFrontiers in microbiology · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Distribution of NDM1 Carbapenemase-ProducingInfection and drug resistance · 2020
    Article
  11. Article
  12. Review
  13. Review
  14. First literature review of carbapenem-resistantNew microbes and new infections · 2018
    Review
  15. Article
  16. The Integrative Conjugative ElementFrontiers in microbiology · 2018
    Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Abiola Olumuyiwa Olaitan
Seydina M Diene
Marc Victor Assous
Jean-Marc Rolain
Centre National de la Recherche Scientifique · FRInstitut de Recherche pour le Développement · FRShaare Zedek Medical Center · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We performed a detailed whole-genome sequence analysis of Providencia rettgeri H1736, a multidrug-resistant clinical pathogen isolated in Israel in 2011. The objective was to describe the genomic flexibility of this bacterium that has greatly contributed to its pathogenicity. The genome has a chromosome size of 4,609,352 bp with 40.22% GC content. Five plasmids were predicted, as well as other mobile genetic elements (MGEs) including phages, genomic islands, and integrative and conjugative elements. The resistome consisted of a total of 27 different antibiotic resistance genes including blaNDM-1, mostly located on MGEs. Phenotypically, the bacteria displayed resistance to a total of ten different antimicrobial classes. Various features such as metabolic operons (including a novel carbapenem biosynthesis operon) and virulence genes were also borne on the MGEs, making P. rettgeri H1736 significantly different from other P. rettgeri isolates. A large quantity of the genetic diversity that exists in P. rettgeri H1736 was due to extensive horizontal gene transfer events, leading to an enormous presence of MGEs in its genome. Most of these changes contributed toward the pathogenic evolution of this bacterium.

Indexed as

Evolution, MolecularAnti-Bacterial Agentsbeta-LactamasesDrug Resistance, MultipleEnterobacteriaceae InfectionsGene Transfer, HorizontalGenome, BacterialHumansMolecular Sequence AnnotationPhylogenyProvidenciaSequence Analysis, DNAAnti-Bacterial Agentsbeta-lactamase NDM-1beta-Lactamases

Identifiers

PMID27386606
PMCPMC4823973
OpenAlexW2255632079

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.