Evidence map›Paper›PMID 27386516›Full record

ArticleScience advances2016

Mutation at a distance caused by homopolymeric guanine repeats in Saccharomyces cerevisiae.

Michael J McDonald, Yen-Hsin Yu, Jheng-Fen Guo, Shin Yen Chong, Cheng-Fu Kao, Jun-Yi Leu

Abstract read
In one paragraph

Article in Science advances, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. The putative error prone polymerasenpj antimicrobials and resistance · 2024
    Article
  4. Article
  5. Cellular Responses to Widespread DNA Replication Stress.International journal of molecular sciences · 2023
    Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Michael J McDonaldInstitute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan.
Yen-Hsin YuInstitute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan.
Jheng-Fen GuoInstitute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan.
Shin Yen ChongInstitute of Cellular and Organismic Biology, Academia Sinica, Taipei 11529, Taiwan.; Graduate Institute of Food Science and Technology, National Taiwan University, Taipei 10617, Taiwan.
Cheng-Fu KaoInstitute of Cellular and Organismic Biology, Academia Sinica, Taipei 11529, Taiwan.ORCID 0000-0002-8875-8152
Jun-Yi LeuInstitute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mutation provides the raw material from which natural selection shapes adaptations. The rate at which new mutations arise is therefore a key factor that determines the tempo and mode of evolution. However, an accurate assessment of the mutation rate of a given organism is difficult because mutation rate varies on a fine scale within a genome. A central challenge of evolutionary genetics is to determine the underlying causes of this variation. In earlier work, we had shown that repeat sequences not only are prone to a high rate of expansion and contraction but also can cause an increase in mutation rate (on the order of kilobases) of the sequence surrounding the repeat. We perform experiments that show that simple guanine repeats 13 bp (base pairs) in length or longer (G 13+ ) increase the substitution rate 4- to 18-fold in the downstream DNA sequence, and this correlates with DNA replication timing (R = 0.89). We show that G 13+ mutagenicity results from the interplay of both error-prone translesion synthesis and homologous recombination repair pathways. The mutagenic repeats that we study have the potential to be exploited for the artificial elevation of mutation rate in systems biology and synthetic biology applications.

Indexed as

MutationTandem Repeat SequencesDNA Repeat ExpansionDNA ReplicationGuanineModels, BiologicalMutagenesisMutation RateRad52 DNA Repair and Recombination ProteinSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence Analysis, DNATranscription, GeneticGuanineRad52 DNA Repair and Recombination ProteinSaccharomyces cerevisiae Proteinsevolutionhomologous recombinationMutation at a distancemutatorrepeat sequencetranslesion synthesis

Identifiers

PMID27386516
PMCPMC4928981

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.