Evidence map›Paper›PMID 27386515›Full record

ArticleScience advances2016

Genetic markers for antioxidant capacity in a reef-building coral.

Young K Jin, Petra Lundgren, Adrian Lutz, Jean-Baptiste Raina, Emily J Howells, Allison S Paley, Bette L Willis, Madeleine J H van Oppen

Abstract read
In one paragraph

Article in Science advances, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Using naturally occurring climate resilient corals to construct bleaching-resistant nurseries.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Young K JinAustralian Institute of Marine Science (AIMS), PMB No. 3, Townsville, Queensland 4810, Australia.; College of Science and Engineering, James Cook University, Townsville, Queensland 4811, Australia.; AIMS@JCU, James Cook University, Townsville, Queensland 4811, Australia.; Australian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Queensland 4811, Australia.ORCID 0000-0002-5363-7553
Petra LundgrenAustralian Institute of Marine Science (AIMS), PMB No. 3, Townsville, Queensland 4810, Australia.; Department of Anatomy and Developmental Biology, School of Biomedical Sciences, Monash University, Clayton, Victoria 3800, Australia.
Adrian LutzAustralian Institute of Marine Science (AIMS), PMB No. 3, Townsville, Queensland 4810, Australia.; AIMS@JCU, James Cook University, Townsville, Queensland 4811, Australia.; Australian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Queensland 4811, Australia.; College of Public Health, Medical and Veterinary Sciences, James Cook University, Townsville, Queensland 4811, Australia.; School of BioSciences, University of Melbourne, Parkville, Victoria 3010, Australia.ORCID 0000-0002-8392-3921
Jean-Baptiste RainaAustralian Institute of Marine Science (AIMS), PMB No. 3, Townsville, Queensland 4810, Australia.; College of Science and Engineering, James Cook University, Townsville, Queensland 4811, Australia.; AIMS@JCU, James Cook University, Townsville, Queensland 4811, Australia.; Australian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Queensland 4811, Australia.; Plant Functional Biology and Climate Change Cluster, University of Technology Sydney, Sydney, New South Wales 2007, Australia.
Emily J HowellsAustralian Institute of Marine Science (AIMS), PMB No. 3, Townsville, Queensland 4810, Australia.; College of Science and Engineering, James Cook University, Townsville, Queensland 4811, Australia.; AIMS@JCU, James Cook University, Townsville, Queensland 4811, Australia.; Australian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Queensland 4811, Australia.; Center for Genomics and Systems Biology, New York University Abu Dhabi, United Arab Emirates.
Allison S PaleyAustralian Institute of Marine Science (AIMS), PMB No. 3, Townsville, Queensland 4810, Australia.; College of Science and Engineering, James Cook University, Townsville, Queensland 4811, Australia.; AIMS@JCU, James Cook University, Townsville, Queensland 4811, Australia.; Australian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Queensland 4811, Australia.ORCID 0000-0002-3491-9993
Bette L WillisCollege of Science and Engineering, James Cook University, Townsville, Queensland 4811, Australia.; AIMS@JCU, James Cook University, Townsville, Queensland 4811, Australia.; Australian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Queensland 4811, Australia.ORCID 0000-0002-9341-6448
Madeleine J H van OppenAustralian Institute of Marine Science (AIMS), PMB No. 3, Townsville, Queensland 4810, Australia.; AIMS@JCU, James Cook University, Townsville, Queensland 4811, Australia.; Australian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Queensland 4811, Australia.; School of BioSciences, University of Melbourne, Parkville, Victoria 3010, Australia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The current lack of understanding of the genetic basis underlying environmental stress tolerance in reef-building corals impairs the development of new management approaches to confronting the global demise of coral reefs. On the Great Barrier Reef (GBR), an approximately 51% decline in coral cover occurred over the period 1985-2012. We conducted a gene-by-environment association analysis across 12° latitude on the GBR, as well as both in situ and laboratory genotype-by-phenotype association analyses. These analyses allowed us to identify alleles at two genetic loci that account for differences in environmental stress tolerance and antioxidant capacity in the common coral Acropora millepora. The effect size for antioxidant capacity was considerable and biologically relevant (32.5 and 14.6% for the two loci). Antioxidant capacity is a critical component of stress tolerance because a multitude of environmental stressors cause increased cellular levels of reactive oxygen species. Our findings provide the first step toward the development of novel coral reef management approaches, such as spatial mapping of stress tolerance for use in marine protected area design, identification of stress-tolerant colonies for assisted migration, and marker-assisted selective breeding to create more tolerant genotypes for restoration of denuded reefs.

Indexed as

Coral ReefsGenetic MarkersAnimalsAnthozoaAntioxidantsBiological EvolutionClimate ChangeEnvironmentGene-Environment InteractionPolymorphism, Single NucleotideQuantitative Trait LociStress, PhysiologicalTemperatureWaterAntioxidantsGenetic MarkersWaterantioxidant capacityAssisted Evolutionclimate changeCoralcoral reef restorationQTL

Identifiers

PMID27386515
PMCPMC4928996

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.